RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030016228	Gene ID		Accession	-
Symbol	FHIT	Alias	-	Full Name	NA
Status	Confidence	Length	783192 bases	Strand	Plus strand
Position	LUXR01026168.1 : 629115 - 1412306	RNA binding domain	DcpS_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030010133	DcpS_C	PF11969	3.4e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FHIT-201	ENSSSCT00030022492	754	149aa	ENSSSCP00030010133
FHIT-202	ENSSSCT00030022505	1347	160aa	ENSSSCP00030010140
FHIT-203	ENSSSCT00030022527	429	142aa	ENSSSCP00030010151

Gene Model

Click here to download ENSSSCG00030016228's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030016228's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030016228

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	80	74.375	equus_caballus	ENSECAP00000078283	71.9101	66.8539
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_landrace	ENSSSCP00045009398	100	100
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_wuzhishan	ENSSSCP00005039420	100	100
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_jinhua	ENSSSCP00060026202	100	100
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_hampshire	ENSSSCP00035025223	100	100
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_largewhite	ENSSSCP00025031354	100	100
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_meishan	ENSSSCP00040029574	100	100
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_berkshire	ENSSSCP00065009688	100	100
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_bamei	ENSSSCP00050015054	100	100
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_tibetan	ENSSSCP00015024470	100	100
ENSSSCG00030016228	sus_scrofa_rongchang	ENSSSCP00030010140	100	100	sus_scrofa_pietrain	ENSSSCP00055001629	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression