RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030015060	Gene ID		Accession	-
Symbol	PRPF38A	Alias	-	Full Name	NA
Status	Confidence	Length	28153 bases	Strand	Plus strand
Position	LUXR01023879.1 : 1156396 - 1184548	RNA binding domain	PRP38
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030009294	PRP38	PF03371	2.4e-63	1
ENSSSCP00030009298	PRP38	PF03371	2.7e-63	1
ENSSSCP00030009281	PRP38	PF03371	3e-63	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PRPF38A-201	ENSSSCT00030020776	1692	340aa	ENSSSCP00030009281
PRPF38A-202	ENSSSCT00030020798	2321	312aa	ENSSSCP00030009294
PRPF38A-203	ENSSSCT00030020807	1229	348aa	ENSSSCP00030009298

Gene Model

Click here to download ENSSSCG00030015060's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030015060's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030015060

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	60.9195	56.8966	equus_caballus	ENSECAP00000085917	65.2308	60.9231
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	69.2529	66.954	sus_scrofa_landrace	ENSSSCP00045005283	77.2436	74.6795
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	69.2529	66.954	sus_scrofa	ENSSSCP00000025857	77.2436	74.6795
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	69.2529	66.954	sus_scrofa_usmarc	ENSSSCP00070051554	77.2436	74.6795
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	69.2529	66.954	sus_scrofa_wuzhishan	ENSSSCP00005027024	77.2436	74.6795
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	73.2759	69.5402	sus_scrofa_jinhua	ENSSSCP00060032579	70.442	66.8508
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	69.2529	66.954	sus_scrofa_hampshire	ENSSSCP00035038787	77.2436	74.6795
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	69.2529	66.954	bos_taurus	ENSBTAP00000003524	77.2436	74.6795
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	73.2759	69.5402	sus_scrofa_largewhite	ENSSSCP00025003665	70.442	66.8508
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	73.2759	69.5402	sus_scrofa_meishan	ENSSSCP00040043875	70.442	66.8508
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	73.2759	69.5402	sus_scrofa_berkshire	ENSSSCP00065012870	70.442	66.8508
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	70.1149	66.954	ovis_aries_rambouillet	ENSOARP00020010068	82.1549	78.4512
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	73.5632	69.8276	sus_scrofa_bamei	ENSSSCP00050037099	70.7182	67.1271
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	73.2759	69.5402	sus_scrofa_tibetan	ENSSSCP00015029614	70.442	66.8508
ENSSSCG00030015060	sus_scrofa_rongchang	ENSSSCP00030009298	73.5632	69.8276	sus_scrofa_pietrain	ENSSSCP00055047776	70.7182	67.1271

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression