RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00030011172 | Gene ID |
100522795 |
Accession |
- |
Symbol |
AFF3 |
Alias |
- |
Full Name |
REV1 DNA directed polymerase |
Status |
Confidence |
Length |
727920 bases |
Strand |
Minus strand |
Position |
LUXR01008345.1 : 217662 - 945581 |
RNA binding domain |
AF-4 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00030006929 |
AF-4 |
PF05110 |
1.3e-129 |
1 |
ENSSSCP00030006929 |
AF-4 |
PF05110 |
1.3e-129 |
2 |
ENSSSCP00030006925 |
AF-4 |
PF05110 |
2e-129 |
1 |
ENSSSCP00030006925 |
AF-4 |
PF05110 |
2e-129 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
AFF3-202 |
ENSSSCT00030015338 |
8195 |
1350aa |
ENSSSCP00030006887 |
AFF3-201 |
ENSSSCT00030015363 |
4180 |
1222aa |
ENSSSCP00030006894 |
AFF3-203 |
ENSSSCT00030015384 |
4419 |
1251aa |
ENSSSCP00030006903 |
AFF3-204 |
ENSSSCT00030015388 |
4266 |
1200aa |
ENSSSCP00030006906 |
AFF3-205 |
ENSSSCT00030015411 |
4268 |
1177aa |
ENSSSCP00030006917 |
AFF3-206 |
ENSSSCT00030015423 |
5545 |
1252aa |
ENSSSCP00030006925 |
AFF3-207 |
ENSSSCT00030015428 |
5178 |
1227aa |
ENSSSCP00030006929 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030001140 | 32.166 | 18.5473 | sus_scrofa_rongchang | ENSSSCP00030006887 | 18.3704 | 10.5926 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030032807 | 24.6871 | 9.67008 | sus_scrofa_rongchang | ENSSSCP00030006887 | 16.0741 | 6.2963 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030004145 | 27.9869 | 11.784 | sus_scrofa_rongchang | ENSSSCP00030006887 | 12.6667 | 5.33333 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030037577 | 34.0883 | 18.573 | sus_scrofa_rongchang | ENSSSCP00030006887 | 22.2963 | 12.1481 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030036794 | 31.6619 | 19.0544 | sus_scrofa_rongchang | ENSSSCP00030006887 | 16.3704 | 9.85185 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 85.1852 | 80.2222 | equus_caballus | ENSECAP00000085586 | 90.694 | 85.4101 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 90.5185 | 90.5185 | sus_scrofa_landrace | ENSSSCP00045022748 | 97.6819 | 97.6819 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 90.5185 | 90.3704 | sus_scrofa | ENSSSCP00000043808 | 97.6819 | 97.522 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 99.8519 | 99.7037 | sus_scrofa_usmarc | ENSSSCP00070048349 | 99.8519 | 99.7037 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 99.7037 | 99.7037 | sus_scrofa_wuzhishan | ENSSSCP00005001777 | 94.2577 | 94.2577 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 90.3704 | 90.3704 | sus_scrofa_jinhua | ENSSSCP00060047128 | 97.522 | 97.522 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 90.3704 | 90.2222 | sus_scrofa_hampshire | ENSSSCP00035006157 | 97.522 | 97.3621 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 83.037 | 78.5185 | bos_taurus | ENSBTAP00000073575 | 89.4653 | 84.597 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 99.8519 | 99.7778 | sus_scrofa_largewhite | ENSSSCP00025012521 | 94.3978 | 94.3277 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 90.3704 | 90.2963 | sus_scrofa_meishan | ENSSSCP00040018012 | 97.522 | 97.442 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 99.8519 | 99.7037 | sus_scrofa_berkshire | ENSSSCP00065040051 | 99.8519 | 99.7037 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 90.4444 | 90.3704 | sus_scrofa_bamei | ENSSSCP00050039095 | 97.6019 | 97.522 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 90.3704 | 90.3704 | sus_scrofa_tibetan | ENSSSCP00015012186 | 99.8363 | 99.8363 |
ENSSSCG00030011172 | sus_scrofa_rongchang | ENSSSCP00030006887 | 90.4444 | 90.2963 | sus_scrofa_pietrain | ENSSSCP00055035297 | 97.6019 | 97.442 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |