Description

Ensembl ID ENSSSCG00030011172 Gene ID 100522795 Accession -
Symbol AFF3 Alias - Full Name REV1 DNA directed polymerase
Status Confidence Length 727920 bases Strand Minus strand
Position LUXR01008345.1 : 217662 - 945581 RNA binding domain AF-4
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00030006929 AF-4 PF05110 1.3e-129 1
ENSSSCP00030006929 AF-4 PF05110 1.3e-129 2
ENSSSCP00030006925 AF-4 PF05110 2e-129 1
ENSSSCP00030006925 AF-4 PF05110 2e-129 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
AFF3-202 ENSSSCT00030015338 8195 1350aa ENSSSCP00030006887
AFF3-201 ENSSSCT00030015363 4180 1222aa ENSSSCP00030006894
AFF3-203 ENSSSCT00030015384 4419 1251aa ENSSSCP00030006903
AFF3-204 ENSSSCT00030015388 4266 1200aa ENSSSCP00030006906
AFF3-205 ENSSSCT00030015411 4268 1177aa ENSSSCP00030006917
AFF3-206 ENSSSCT00030015423 5545 1252aa ENSSSCP00030006925
AFF3-207 ENSSSCT00030015428 5178 1227aa ENSSSCP00030006929

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000114032.16618.5473sus_scrofa_rongchangENSSSCP0003000688718.370410.5926
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003003280724.68719.67008sus_scrofa_rongchangENSSSCP0003000688716.07416.2963
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000414527.986911.784sus_scrofa_rongchangENSSSCP0003000688712.66675.33333
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003003757734.088318.573sus_scrofa_rongchangENSSSCP0003000688722.296312.1481
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003003679431.661919.0544sus_scrofa_rongchangENSSSCP0003000688716.37049.85185

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688785.185280.2222equus_caballusENSECAP0000008558690.69485.4101
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688790.518590.5185sus_scrofa_landraceENSSSCP0004502274897.681997.6819
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688790.518590.3704sus_scrofaENSSSCP0000004380897.681997.522
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688799.851999.7037sus_scrofa_usmarcENSSSCP0007004834999.851999.7037
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688799.703799.7037sus_scrofa_wuzhishanENSSSCP0000500177794.257794.2577
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688790.370490.3704sus_scrofa_jinhuaENSSSCP0006004712897.52297.522
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688790.370490.2222sus_scrofa_hampshireENSSSCP0003500615797.52297.3621
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688783.03778.5185bos_taurusENSBTAP0000007357589.465384.597
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688799.851999.7778sus_scrofa_largewhiteENSSSCP0002501252194.397894.3277
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688790.370490.2963sus_scrofa_meishanENSSSCP0004001801297.52297.442
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688799.851999.7037sus_scrofa_berkshireENSSSCP0006504005199.851999.7037
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688790.444490.3704sus_scrofa_bameiENSSSCP0005003909597.601997.522
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688790.370490.3704sus_scrofa_tibetanENSSSCP0001501218699.836399.8363
ENSSSCG00030011172sus_scrofa_rongchangENSSSCP0003000688790.444490.2963sus_scrofa_pietrainENSSSCP0005503529797.601997.442

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression