RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030010225	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	16356 bases	Strand	Minus strand
Position	LUXR01007586.1 : 196 - 16551	RNA binding domain	tRNA-synt_1g , tRNA-synt_1e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030006279	tRNA-synt_1g	PF09334	0.00012	1
ENSSSCP00030006279	tRNA-synt_1e	PF01406	8.7e-33	2
ENSSSCP00030006271	tRNA-synt_1g	PF09334	0.00038	1
ENSSSCP00030006271	tRNA-synt_1e	PF01406	1.5e-53	2
ENSSSCP00030006290	tRNA-synt_1e	PF01406	1.4e-21	1
ENSSSCP00030006286	tRNA-synt_1e	PF01406	1.6e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030014011	1314	437aa	ENSSSCP00030006271
-	ENSSSCT00030014020	705	234aa	ENSSSCP00030006279
-	ENSSSCT00030014029	515	157aa	ENSSSCP00030006286
-	ENSSSCT00030014035	548	168aa	ENSSSCP00030006290

Gene Model

Click here to download ENSSSCG00030010225's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030010225's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030003654	17.5896	10.7492	sus_scrofa_rongchang	ENSSSCP00030006271	12.357	7.55149
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030046131	20.2572	13.5048	sus_scrofa_rongchang	ENSSSCP00030006271	43.2494	28.833

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	59.0389	48.9703	equus_caballus	ENSECAP00000052853	43.2161	35.8459
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	55.8352	50.1144	sus_scrofa_landrace	ENSSSCP00045033576	35.3111	31.6932
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	64.5309	59.4966	sus_scrofa	ENSSSCP00000064922	44.27	40.8163
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	64.5309	59.4966	sus_scrofa_usmarc	ENSSSCP00070023607	44.27	40.8163
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	49.1991	45.9954	sus_scrofa_wuzhishan	ENSSSCP00005025033	61.2536	57.265
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	64.5309	59.4966	sus_scrofa_jinhua	ENSSSCP00060027000	50.6284	46.6786
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	55.8352	50.1144	sus_scrofa_hampshire	ENSSSCP00035010155	35.3111	31.6932
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	57.4371	48.2838	bos_taurus	ENSBTAP00000068554	42.6146	35.8234
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	55.8352	50.1144	sus_scrofa_largewhite	ENSSSCP00025046982	35.3111	31.6932
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	64.7597	59.7254	sus_scrofa_meishan	ENSSSCP00040042939	31.2362	28.8079
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	64.5309	59.4966	sus_scrofa_berkshire	ENSSSCP00065031644	50.6284	46.6786
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	57.6659	48.9703	ovis_aries_rambouillet	ENSOARP00020005738	35.3436	30.014
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	64.5309	59.4966	sus_scrofa_bamei	ENSSSCP00050047084	50.6284	46.6786
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	61.3272	56.0641	sus_scrofa_tibetan	ENSSSCP00015020405	48.0287	43.9068
ENSSSCG00030010225	sus_scrofa_rongchang	ENSSSCP00030006271	64.5309	59.4966	sus_scrofa_pietrain	ENSSSCP00055009366	50.6284	46.6786

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression