Description

Ensembl ID ENSSSCG00030004098 Gene ID 100525539 Accession -
Symbol FXR1 Alias - Full Name FMR1 autosomal homolog 1
Status Confidence Length 60506 bases Strand Plus strand
Position LUXR01006382.1 : 243126 - 303631 RNA binding domain Agenet , FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00030002349 Agenet PF05641 9.2e-15 1
ENSSSCP00030002349 Agenet PF05641 9.2e-15 2
ENSSSCP00030002349 FXR_C1 PF16096 4.9e-39 3
ENSSSCP00030002349 KH_1 PF00013 6.4e-17 4
ENSSSCP00030002349 KH_1 PF00013 6.4e-17 5
ENSSSCP00030002349 KH_9 PF17904 1.3e-36 6
ENSSSCP00030002349 FXMRP1_C_core PF12235 6.4e-34 7
ENSSSCP00030002349 FXMRP1_C_core PF12235 6.4e-34 8
ENSSSCP00030002327 Agenet PF05641 1.1e-14 1
ENSSSCP00030002327 Agenet PF05641 1.1e-14 2
ENSSSCP00030002327 FXR_C1 PF16096 5.3e-39 3
ENSSSCP00030002327 KH_1 PF00013 7.3e-17 4
ENSSSCP00030002327 KH_1 PF00013 7.3e-17 5
ENSSSCP00030002327 KH_9 PF17904 1.4e-36 6
ENSSSCP00030002327 FXMRP1_C_core PF12235 2e-54 7
ENSSSCP00030002356 Agenet PF05641 1.2e-14 1
ENSSSCP00030002356 Agenet PF05641 1.2e-14 2
ENSSSCP00030002356 FXR_C1 PF16096 4.9e-39 3
ENSSSCP00030002356 KH_1 PF00013 7e-17 4
ENSSSCP00030002356 KH_1 PF00013 7e-17 5
ENSSSCP00030002356 KH_9 PF17904 4e-16 6
ENSSSCP00030002356 FXMRP1_C_core PF12235 9.6e-33 7
ENSSSCP00030002356 FXMRP1_C_core PF12235 9.6e-33 8
ENSSSCP00030002388 Agenet PF05641 1.2e-14 1
ENSSSCP00030002388 Agenet PF05641 1.2e-14 2
ENSSSCP00030002388 FXR_C1 PF16096 1.2e-38 3
ENSSSCP00030002388 KH_1 PF00013 8.8e-17 4
ENSSSCP00030002388 KH_1 PF00013 8.8e-17 5
ENSSSCP00030002388 KH_9 PF17904 1.6e-36 6
ENSSSCP00030002388 FXMRP1_C_core PF12235 2.2e-54 7
ENSSSCP00030002313 Agenet PF05641 1.8e-14 1
ENSSSCP00030002313 FXR_C1 PF16096 1.4e-38 2
ENSSSCP00030002313 KH_1 PF00013 1.1e-16 3
ENSSSCP00030002313 KH_1 PF00013 1.1e-16 4
ENSSSCP00030002313 KH_9 PF17904 1.6e-36 5
ENSSSCP00030002313 FXMRP1_C_core PF12235 2.3e-54 6
ENSSSCP00030002434 Agenet PF05641 2.2e-08 1
ENSSSCP00030002434 FXR_C1 PF16096 4.5e-39 2
ENSSSCP00030002434 KH_1 PF00013 5.6e-17 3
ENSSSCP00030002434 KH_1 PF00013 5.6e-17 4
ENSSSCP00030002434 KH_9 PF17904 1.2e-36 5
ENSSSCP00030002434 FXMRP1_C_core PF12235 6.3e-33 6
ENSSSCP00030002434 FXMRP1_C_core PF12235 6.3e-33 7
ENSSSCP00030002413 Agenet PF05641 2.6e-08 1
ENSSSCP00030002413 FXR_C1 PF16096 1.1e-38 2
ENSSSCP00030002413 KH_1 PF00013 7.9e-17 3
ENSSSCP00030002413 KH_1 PF00013 7.9e-17 4
ENSSSCP00030002413 KH_9 PF17904 1.5e-36 5
ENSSSCP00030002413 FXMRP1_C_core PF12235 1.9e-54 6
ENSSSCP00030002406 Agenet PF05641 3.1e-08 1
ENSSSCP00030002406 FXR_C1 PF16096 1.4e-38 2
ENSSSCP00030002406 KH_1 PF00013 9.6e-17 3
ENSSSCP00030002406 KH_1 PF00013 9.6e-17 4
ENSSSCP00030002406 KH_9 PF17904 1.5e-36 5
ENSSSCP00030002406 FXMRP1_C_core PF12235 2.3e-54 6
ENSSSCP00030002399 Agenet PF05641 7.3e-06 1
ENSSSCP00030002399 FXR_C1 PF16096 4.3e-39 2
ENSSSCP00030002399 KH_1 PF00013 5.1e-17 3
ENSSSCP00030002399 KH_1 PF00013 5.1e-17 4
ENSSSCP00030002399 KH_9 PF17904 1.1e-36 5
ENSSSCP00030002399 FXMRP1_C_core PF12235 4.9e-34 6
ENSSSCP00030002399 FXMRP1_C_core PF12235 4.9e-34 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
FXR1-201 ENSSSCT00030005623 3009 677aa ENSSSCP00030002313
FXR1-202 ENSSSCT00030005647 3122 568aa ENSSSCP00030002327
FXR1-203 ENSSSCT00030005687 3035 539aa ENSSSCP00030002349
FXR1-204 ENSSSCT00030005699 2670 582aa ENSSSCP00030002356
FXR1-205 ENSSSCT00030005742 6600 604aa ENSSSCP00030002388
FXR1-206 ENSSSCT00030005756 2864 490aa ENSSSCP00030002399
FXR1-209 ENSSSCT00030005769 3178 646aa ENSSSCP00030002406
FXR1-208 ENSSSCT00030005776 6496 573aa ENSSSCP00030002413
FXR1-207 ENSSSCT00030005800 1521 506aa ENSSSCP00030002434

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP0003004869470.670460.6145sus_scrofa_rongchangENSSSCP0003000231374.741564.1064
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP0003000101067.088657.2785sus_scrofa_rongchangENSSSCP0003000231362.629253.4712

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP0003000231399.556999.4092equus_caballusENSECAP0000002353996.561696.4183
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_landraceENSSSCP00045016997100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofaENSSSCP00000023407100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_usmarcENSSSCP00070035232100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_wuzhishanENSSSCP00005006524100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_jinhuaENSSSCP00060012232100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_hampshireENSSSCP00035026896100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP0003000231395.42195.2733bos_taurusENSBTAP0000006881799.691499.537
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_largewhiteENSSSCP00025034378100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_meishanENSSSCP00040017268100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_berkshireENSSSCP00065040113100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP0003000231390.251188.9217ovis_aries_rambouilletENSOARP000200077359492.6154
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_bameiENSSSCP00050013264100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_tibetanENSSSCP00015039423100100
ENSSSCG00030004098sus_scrofa_rongchangENSSSCP00030002313100100sus_scrofa_pietrainENSSSCP00055003371100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression