RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00030003407	Gene ID	100626560	Accession	-
Symbol	STAU1	Alias	-	Full Name	staufen double-stranded RNA binding protein 1
Status	Confidence	Length	63584 bases	Strand	Minus strand
Position	LUXR01004456.1 : 2146023 - 2209606	RNA binding domain	dsrm , Staufen_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030001836	dsrm	PF00035	3.7e-46	1
ENSSSCP00030001836	dsrm	PF00035	3.7e-46	2
ENSSSCP00030001836	dsrm	PF00035	3.7e-46	3
ENSSSCP00030001836	dsrm	PF00035	3.7e-46	4
ENSSSCP00030001836	Staufen_C	PF16482	4.3e-57	5
ENSSSCP00030001909	dsrm	PF00035	8.5e-46	1
ENSSSCP00030001909	dsrm	PF00035	8.5e-46	2
ENSSSCP00030001909	dsrm	PF00035	8.5e-46	3
ENSSSCP00030001909	dsrm	PF00035	8.5e-46	4
ENSSSCP00030001909	Staufen_C	PF16482	3.1e-57	5
ENSSSCP00030001944	dsrm	PF00035	1.2e-33	1
ENSSSCP00030001944	dsrm	PF00035	1.2e-33	2
ENSSSCP00030001944	dsrm	PF00035	1.2e-33	3
ENSSSCP00030001944	Staufen_C	PF16482	2.6e-57	4
ENSSSCP00030001929	dsrm	PF00035	3e-33	1
ENSSSCP00030001929	dsrm	PF00035	3e-33	2
ENSSSCP00030001929	dsrm	PF00035	3e-33	3
ENSSSCP00030001929	Staufen_C	PF16482	3e-57	4
ENSSSCP00030001879	dsrm	PF00035	3.4e-33	1
ENSSSCP00030001879	dsrm	PF00035	3.4e-33	2
ENSSSCP00030001879	dsrm	PF00035	3.4e-33	3
ENSSSCP00030001879	Staufen_C	PF16482	3.9e-57	4
ENSSSCP00030001824	dsrm	PF00035	1.2e-32	1
ENSSSCP00030001824	dsrm	PF00035	1.2e-32	2
ENSSSCP00030001824	Staufen_C	PF16482	4.4e-57	3
ENSSSCP00030001900	dsrm	PF00035	1e-29	1
ENSSSCP00030001900	dsrm	PF00035	1e-29	2
ENSSSCP00030001900	dsrm	PF00035	1e-29	3
ENSSSCP00030001900	Staufen_C	PF16482	4.3e-57	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
STAU1-201	ENSSSCT00030004600	3098	574aa	ENSSSCP00030001824
STAU1-202	ENSSSCT00030004630	3399	599aa	ENSSSCP00030001836
STAU1-204	ENSSSCT00030004739	3289	577aa	ENSSSCP00030001879
STAU1-205	ENSSSCT00030004787	3190	544aa	ENSSSCP00030001900
STAU1-203	ENSSSCT00030004809	3361	687aa	ENSSSCP00030001909
STAU1-206	ENSSSCT00030004860	3460	521aa	ENSSSCP00030001929
STAU1-207	ENSSSCT00030004899	3370	496aa	ENSSSCP00030001944

Gene Model

Click here to download ENSSSCG00030003407's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030003407's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030016720	4.52099	1.39935	sus_scrofa_rongchang	ENSSSCP00030001909	6.11354	1.89229
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030044183	19.4107	9.53206	sus_scrofa_rongchang	ENSSSCP00030001909	16.3028	8.00582
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030002752	34.1853	23.0032	sus_scrofa_rongchang	ENSSSCP00030001909	15.575	10.4803
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030009194	13.7313	6.36816	sus_scrofa_rongchang	ENSSSCP00030001909	20.0873	9.31587
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030028426	6.0472	2.0649	sus_scrofa_rongchang	ENSSSCP00030001909	5.96798	2.03785
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030027660	66.6139	52.5316	sus_scrofa_rongchang	ENSSSCP00030001909	61.2809	48.3261
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030040871	20.3152	12.2592	sus_scrofa_rongchang	ENSSSCP00030001909	16.885	10.1892
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030046547	16.441	7.3501	sus_scrofa_rongchang	ENSSSCP00030001909	12.3726	5.5313
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030017165	30.6011	19.6721	sus_scrofa_rongchang	ENSSSCP00030001909	16.3028	10.4803
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030007975	22.023	12.2919	sus_scrofa_rongchang	ENSSSCP00030001909	25.0364	13.9738
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030018834	13.7931	5.96459	sus_scrofa_rongchang	ENSSSCP00030001909	21.5429	9.31587
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030037347	12.6582	5.82278	sus_scrofa_rongchang	ENSSSCP00030001909	7.27802	3.34789
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030043081	19.5559	10.5892	sus_scrofa_rongchang	ENSSSCP00030001909	33.3333	18.0495
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030046579	22.2071	12.9428	sus_scrofa_rongchang	ENSSSCP00030001909	23.7263	13.8282

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	99.2722	98.3988	equus_caballus	ENSECAP00000034828	99.2722	98.3988
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_landrace	ENSSSCP00045003772	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa	ENSSSCP00000033939	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	97.671	97.671	sus_scrofa_usmarc	ENSSSCP00070028447	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_wuzhishan	ENSSSCP00005029613	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_jinhua	ENSSSCP00060006493	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_hampshire	ENSSSCP00035011756	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	82.3872	81.8049	bos_taurus	ENSBTAP00000000301	98.0936	97.4003
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_largewhite	ENSSSCP00025046910	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_meishan	ENSSSCP00040044781	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_berkshire	ENSSSCP00065033100	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	82.5328	81.6594	ovis_aries_rambouillet	ENSOARP00020030657	98.2669	97.227
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_bamei	ENSSSCP00050008195	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_tibetan	ENSSSCP00015001568	100	100
ENSSSCG00030003407	sus_scrofa_rongchang	ENSSSCP00030001909	100	100	sus_scrofa_pietrain	ENSSSCP00055038118	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression