RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030003375	Gene ID		Accession	-
Symbol	EIF3L	Alias	-	Full Name	NA
Status	Confidence	Length	27978 bases	Strand	Plus strand
Position	LUXR01009073.1 : 1467154 - 1495131	RNA binding domain	Paf67
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030001775	Paf67	PF10255	1.6e-177	1
ENSSSCP00030001792	Paf67	PF10255	2.1e-177	1
ENSSSCP00030001784	Paf67	PF10255	4.7e-149	1
ENSSSCP00030001784	Paf67	PF10255	4.7e-149	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
EIF3L-201	ENSSSCT00030004472	3665	586aa	ENSSSCP00030001775
EIF3L-202	ENSSSCT00030004507	1804	532aa	ENSSSCP00030001784
EIF3L-203	ENSSSCT00030004528	3653	628aa	ENSSSCP00030001792

Gene Model

Click here to download ENSSSCG00030003375's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030003375's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030003375

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	83.5987	83.121	equus_caballus	ENSECAP00000013127	93.9177	93.381
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	99.5223	99.3631	sus_scrofa_landrace	ENSSSCP00045001016	99.5223	99.3631
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	99.3631	99.2038	sus_scrofa	ENSSSCP00000044686	99.2051	99.0461
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	99.5223	99.3631	sus_scrofa_usmarc	ENSSSCP00070041027	99.681	99.5215
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	80.5732	77.2293	sus_scrofa_wuzhishan	ENSSSCP00005001288	75.0742	71.9585
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	99.0446	98.8854	sus_scrofa_jinhua	ENSSSCP00060018493	99.0446	98.8854
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	99.5223	99.3631	sus_scrofa_hampshire	ENSSSCP00035042800	99.5223	99.3631
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	83.758	83.121	bos_taurus	ENSBTAP00000014281	93.2624	92.5532
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	99.5223	99.3631	sus_scrofa_largewhite	ENSSSCP00025015975	99.5223	99.3631
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	99.2038	99.0446	sus_scrofa_meishan	ENSSSCP00040041796	99.0461	98.8871
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	99.5223	99.3631	sus_scrofa_berkshire	ENSSSCP00065016071	99.5223	99.3631
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	85.828	84.0764	ovis_aries_rambouillet	ENSOARP00020009658	88.7974	86.9852
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	80.7325	77.5478	sus_scrofa_bamei	ENSSSCP00050039572	80.7325	77.5478
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	70.2229	70.0637	sus_scrofa_tibetan	ENSSSCP00015003872	100	99.7732
ENSSSCG00030003375	sus_scrofa_rongchang	ENSSSCP00030001792	94.1083	93.6306	sus_scrofa_pietrain	ENSSSCP00055026906	98.3361	97.8369

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression