RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00030000683	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	346 bases	Strand	Plus strand
Position	LUXR01008494.1 : 658088 - 658433	RNA binding domain	Ribosomal_L37e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00030000425	Ribosomal_L37e	PF01907	2.7e-17	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00030000918	228	75aa	ENSSSCP00030000425

Gene Model

Click here to download ENSSSCG00030000683's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00030000683's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030026969	50	45	sus_scrofa_rongchang	ENSSSCP00030000425	66.6667	60

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	97.3333	94.6667	sus_scrofa_landrace	ENSSSCP00045002702	100	97.2603
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	74.6667	69.3333	sus_scrofa	ENSSSCP00000036658	77.7778	72.2222
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	72	65.3333	sus_scrofa_usmarc	ENSSSCP00070034981	77.1429	70
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	98.6667	98.6667	sus_scrofa_wuzhishan	ENSSSCP00005006308	98.6667	98.6667
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	100	100	sus_scrofa_jinhua	ENSSSCP00060036205	100	100
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	100	100	sus_scrofa_hampshire	ENSSSCP00035017817	100	100
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	97.3333	96	sus_scrofa_largewhite	ENSSSCP00025015887	100	98.6301
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	98.6667	98.6667	sus_scrofa_meishan	ENSSSCP00040039036	98.6667	98.6667
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	100	100	sus_scrofa_berkshire	ENSSSCP00065039006	100	100
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	72	66.6667	ovis_aries_rambouillet	ENSOARP00020004060	72.973	67.5676
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	58.6667	54.6667	ovis_aries_rambouillet	ENSOARP00020007786	59.4595	55.4054
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	70.6667	69.3333	ovis_aries_rambouillet	ENSOARP00020024283	68.8312	67.5325
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	100	100	sus_scrofa_bamei	ENSSSCP00050002684	100	100
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	100	100	sus_scrofa_tibetan	ENSSSCP00015013453	100	100
ENSSSCG00030000683	sus_scrofa_rongchang	ENSSSCP00030000425	100	100	sus_scrofa_pietrain	ENSSSCP00055045589	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression