RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025076450	Gene ID	100037299	Accession	-
Symbol	P4HA1	Alias	-	Full Name	prolyl 4-hydroxylase subunit alpha 1
Status	Confidence	Length	95695 bases	Strand	Plus strand
Position	LUXX01100060.1 : 398090 - 493784	RNA binding domain	2OG-FeII_Oxy
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025047485	2OG-FeII_Oxy	PF03171	3.3e-08	1
ENSSSCP00025047451	2OG-FeII_Oxy	PF03171	3.3e-08	1
ENSSSCP00025047502	2OG-FeII_Oxy	PF03171	0.0001	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
P4HA1-201	ENSSSCT00025105917	2756	512aa	ENSSSCP00025047433
P4HA1-202	ENSSSCT00025105925	2023	491aa	ENSSSCP00025047437
P4HA1-203	ENSSSCT00025105937	1883	485aa	ENSSSCP00025047445
P4HA1-204	ENSSSCT00025105947	3255	534aa	ENSSSCP00025047451
P4HA1-205	ENSSSCT00025105967	2658	511aa	ENSSSCP00025047465
P4HA1-206	ENSSSCT00025105993	4797	534aa	ENSSSCP00025047485
P4HA1-207	ENSSSCT00025106013	4743	516aa	ENSSSCP00025047502
P4HA1-208	ENSSSCT00025106029	2734	508aa	ENSSSCP00025047514

Gene Model

Click here to download ENSSSCG00025076450's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025076450's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025037944	75.514	60.3738	sus_scrofa_largewhite	ENSSSCP00025047485	75.6554	60.4869
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025001565	56.0662	35.6618	sus_scrofa_largewhite	ENSSSCP00025047485	57.1161	36.3296

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	100	100	sus_scrofa_pietrain	ENSSSCP00055030797	100	100
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	100	100	sus_scrofa	ENSSSCP00000035425	100	100
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	99.8127	99.8127	sus_scrofa_bamei	ENSSSCP00050012161	99.8127	99.8127
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	97.3783	95.6929	equus_caballus	ENSECAP00000044479	96.6543	94.9814
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	98.6891	97.9401	sus_scrofa_wuzhishan	ENSSSCP00005009094	98.6891	97.9401
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	99.8127	99.6255	sus_scrofa_tibetan	ENSSSCP00015031284	99.8127	99.6255
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	100	99.8127	sus_scrofa_rongchang	ENSSSCP00030048905	100	99.8127
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	98.5019	97.7528	sus_scrofa_berkshire	ENSSSCP00065008221	98.5019	97.7528
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	78.4644	76.9663	sus_scrofa_meishan	ENSSSCP00040029762	96.3218	94.4828
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	100	100	sus_scrofa_usmarc	ENSSSCP00070010734	100	100
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	100	99.8127	sus_scrofa_jinhua	ENSSSCP00060018487	100	99.8127
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	100	100	sus_scrofa_hampshire	ENSSSCP00035038533	100	100
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	97.5655	96.0674	ovis_aries_rambouillet	ENSOARP00020025976	97.5655	96.0674
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	99.2509	97.9401	bos_taurus	ENSBTAP00000044089	99.2509	97.9401
ENSSSCG00025076450	sus_scrofa_largewhite	ENSSSCP00025047485	100	100	sus_scrofa_landrace	ENSSSCP00045003868	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression