RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025070343	Gene ID		Accession	-
Symbol	PNPT1	Alias	-	Full Name	NA
Status	Confidence	Length	44328 bases	Strand	Plus strand
Position	LUXX01095311.1 : 3377934 - 3422261	RNA binding domain	RNase_PH , RNase_PH_C , PNPase , KH_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025042647	RNase_PH	PF01138	1.1e-39	1
ENSSSCP00025042647	RNase_PH	PF01138	1.1e-39	2
ENSSSCP00025042647	RNase_PH_C	PF03725	5.9e-16	3
ENSSSCP00025042647	PNPase	PF03726	1.5e-07	4
ENSSSCP00025042647	KH_1	PF00013	9.6e-08	5
ENSSSCP00025042845	RNase_PH	PF01138	7.5e-37	1
ENSSSCP00025042845	RNase_PH	PF01138	7.5e-37	2
ENSSSCP00025042845	RNase_PH_C	PF03725	5.8e-16	3
ENSSSCP00025042845	PNPase	PF03726	1.5e-07	4
ENSSSCP00025042845	KH_1	PF00013	8.9e-08	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PNPT1-201	ENSSSCT00025097134	5069	784aa	ENSSSCP00025042647
PNPT1-202	ENSSSCT00025097563	2310	769aa	ENSSSCP00025042845

Gene Model

Click here to download ENSSSCG00025070343's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025070343's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025070343

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	100	100	sus_scrofa_pietrain	ENSSSCP00055039820	100	100
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	100	100	sus_scrofa	ENSSSCP00000045253	100	100
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	93.1122	92.2194	sus_scrofa_bamei	ENSSSCP00050018842	94.1936	93.2903
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	97.7041	94.7704	equus_caballus	ENSECAP00000018223	93.5287	90.7204
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	100	100	sus_scrofa_wuzhishan	ENSSSCP00005037735	100	100
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	100	100	sus_scrofa_tibetan	ENSSSCP00015027328	100	100
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	98.9796	98.7245	sus_scrofa_rongchang	ENSSSCP00030048374	98.6023	98.3482
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	98.9796	98.7245	sus_scrofa_berkshire	ENSSSCP00065003752	98.6023	98.3482
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	100	100	sus_scrofa_meishan	ENSSSCP00040033567	100	100
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	100	100	sus_scrofa_usmarc	ENSSSCP00070051975	100	100
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	93.1122	92.2194	sus_scrofa_jinhua	ENSSSCP00060012179	94.1936	93.2903
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	100	100	sus_scrofa_hampshire	ENSSSCP00035046909	100	100
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	98.2143	95.7908	ovis_aries_rambouillet	ENSOARP00020000192	98.2143	95.7908
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	97.9592	95.0255	bos_taurus	ENSBTAP00000011729	98.0843	95.1469
ENSSSCG00025070343	sus_scrofa_largewhite	ENSSSCP00025042647	100	100	sus_scrofa_landrace	ENSSSCP00045021527	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression