RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025068191	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1280 bases	Strand	Minus strand
Position	LUXX01017974.1 : 1643205 - 1644484	RNA binding domain	Ribosomal_S13_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025041087	Ribosomal_S13_N	PF08069	3.3e-20	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00025093639	192	63aa	ENSSSCP00025041087

Gene Model

Click here to download ENSSSCG00025068191's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025068191's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025010320	25.9434	23.5849	sus_scrofa_largewhite	ENSSSCP00025041087	87.3016	79.3651

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	100	100	sus_scrofa_pietrain	ENSSSCP00055008968	100	100
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	100	100	sus_scrofa	ENSSSCP00000052965	100	100
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	100	100	sus_scrofa_bamei	ENSSSCP00050013205	100	100
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	63.4921	57.1429	equus_caballus	ENSECAP00000079592	55.5556	50
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	100	100	sus_scrofa_wuzhishan	ENSSSCP00005010679	100	100
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	80.9524	80.9524	sus_scrofa_tibetan	ENSSSCP00015017312	92.7273	92.7273
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	100	100	sus_scrofa_rongchang	ENSSSCP00030017659	100	100
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	100	100	sus_scrofa_berkshire	ENSSSCP00065031283	100	100
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	80.9524	80.9524	sus_scrofa_meishan	ENSSSCP00040025716	92.7273	92.7273
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	80.9524	80.9524	sus_scrofa_jinhua	ENSSSCP00060036707	92.7273	92.7273
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	100	100	sus_scrofa_hampshire	ENSSSCP00035007353	100	100
ENSSSCG00025068191	sus_scrofa_largewhite	ENSSSCP00025041087	100	100	sus_scrofa_landrace	ENSSSCP00045014348	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression