RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025066535	Gene ID		Accession	-
Symbol	INTS11	Alias	-	Full Name	NA
Status	Confidence	Length	13968 bases	Strand	Plus strand
Position	LUXX01074672.1 : 9142937 - 9156904	RNA binding domain	Lactamase_B , Beta-Casp , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025040763	Lactamase_B	PF00753	1.7e-11	1
ENSSSCP00025040763	Beta-Casp	PF10996	4.2e-25	2
ENSSSCP00025040763	RMMBL	PF07521	6.2e-16	3
ENSSSCP00025041167	Lactamase_B	PF00753	1.8e-11	1
ENSSSCP00025041167	Beta-Casp	PF10996	2.9e-25	2
ENSSSCP00025041167	RMMBL	PF07521	5.7e-16	3
ENSSSCP00025040979	Lactamase_B	PF00753	1.9e-11	1
ENSSSCP00025040979	Beta-Casp	PF10996	3.7e-25	2
ENSSSCP00025040979	RMMBL	PF07521	6.2e-16	3
ENSSSCP00025041479	Lactamase_B	PF00753	2.3e-11	1
ENSSSCP00025041479	Beta-Casp	PF10996	3.7e-25	2
ENSSSCP00025041479	RMMBL	PF07521	6.1e-16	3
ENSSSCP00025040632	Lactamase_B	PF00753	9.3e-09	1
ENSSSCP00025040632	Beta-Casp	PF10996	4.6e-25	2
ENSSSCP00025040632	RMMBL	PF07521	6.1e-16	3
ENSSSCP00025041355	Beta-Casp	PF10996	3e-25	1
ENSSSCP00025041355	RMMBL	PF07521	4.3e-16	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
INTS11-201	ENSSSCT00025092585	5417	626aa	ENSSSCP00025040632
INTS11-202	ENSSSCT00025092896	5330	597aa	ENSSSCP00025040763
INTS11-203	ENSSSCT00025093407	5153	625aa	ENSSSCP00025040979
INTS11-204	ENSSSCT00025093833	5075	599aa	ENSSSCP00025041167
INTS11-205	ENSSSCT00025094207	1497	498aa	ENSSSCP00025041355
INTS11-206	ENSSSCT00025094455	1956	651aa	ENSSSCP00025041479

Gene Model

Click here to download ENSSSCG00025066535's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025066535's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025012746	48.8095	30.9524	sus_scrofa_largewhite	ENSSSCP00025041479	50.384	31.9508
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025000236	32.9923	18.4143	sus_scrofa_largewhite	ENSSSCP00025041479	39.6313	22.1198
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025023043	32.7189	17.8187	sus_scrofa_largewhite	ENSSSCP00025041479	32.7189	17.8187

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	92.6267	92.1659	sus_scrofa_pietrain	ENSSSCP00055030283	89.8659	89.4188
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	97.8495	97.3886	sus_scrofa	ENSSSCP00000050317	90.3546	89.9291
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	97.8495	97.3886	sus_scrofa_bamei	ENSSSCP00050003847	90.3546	89.9291
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	91.3979	88.6329	equus_caballus	ENSECAP00000028611	70.2479	68.1228
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	94.3164	93.8556	sus_scrofa_wuzhishan	ENSSSCP00005003432	87.34	86.9132
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	92.6267	92.1659	sus_scrofa_tibetan	ENSSSCP00015029460	86.5136	86.0832
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	97.8495	97.3886	sus_scrofa_rongchang	ENSSSCP00030009770	90.3546	89.9291
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	97.8495	97.3886	sus_scrofa_berkshire	ENSSSCP00065047045	90.3546	89.9291
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	97.8495	97.3886	sus_scrofa_meishan	ENSSSCP00040004014	90.3546	89.9291
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	90.6298	90.6298	sus_scrofa_usmarc	ENSSSCP00070050765	98.4975	98.4975
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	100	100	sus_scrofa_jinhua	ENSSSCP00060005040	100	100
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	97.8495	97.3886	sus_scrofa_hampshire	ENSSSCP00035027640	90.3546	89.9291
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	89.5545	88.7865	ovis_aries_rambouillet	ENSOARP00020013544	97.3289	96.4942
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	90.169	88.9401	bos_taurus	ENSBTAP00000058314	82.6761	81.5493
ENSSSCG00025066535	sus_scrofa_largewhite	ENSSSCP00025041479	100	100	sus_scrofa_landrace	ENSSSCP00045039241	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression