RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSSSCG00025064846	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	91549 bases	Strand	Plus strand
Position	LUXX01066655.1 : 502355 - 593903	RNA binding domain	eIF2A
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025039044	eIF2A	PF08662	8.4e-10	1

Showing 1 to 1 of 1 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00025089004	3119	478aa	ENSSSCP00025038921
-	ENSSSCT00025089262	2944	451aa	ENSSSCP00025039044

Showing 1 to 2 of 2 entries

Gene Model

Click here to download ENSSSCG00025064846's gene model file

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025064846's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025008757	17.6806	7.98479	sus_scrofa_largewhite	ENSSSCP00025038921	19.4561	8.78661
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025010891	16.8493	7.53425	sus_scrofa_largewhite	ENSSSCP00025038921	25.7322	11.5063
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025018065	42.3077	27.2436	sus_scrofa_largewhite	ENSSSCP00025038921	27.6151	17.7824
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025006868	12.963	5.97643	sus_scrofa_largewhite	ENSSSCP00025038921	32.2176	14.8536
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025035700	12.2695	6.29371	sus_scrofa_largewhite	ENSSSCP00025038921	40.3766	20.7113
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025047103	25.5914	14.6237	sus_scrofa_largewhite	ENSSSCP00025038921	24.8954	14.2259
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025007231	8.30671	4.72843	sus_scrofa_largewhite	ENSSSCP00025038921	27.1967	15.4812
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025041886	5.1997	2.59985	sus_scrofa_largewhite	ENSSSCP00025038921	28.8703	14.4351
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025042956	17.8099	8.30325	sus_scrofa_largewhite	ENSSSCP00025038921	30.9623	14.4351
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025024077	21.1823	11.0016	sus_scrofa_largewhite	ENSSSCP00025038921	26.9874	14.0167

Showing 1 to 10 of 23 entries

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Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	99.7908	99.7908	sus_scrofa_pietrain	ENSSSCP00055026737	99.7908	99.7908
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	99.7908	99.5816	sus_scrofa	ENSSSCP00000000982	99.7908	99.5816
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	99.7908	99.5816	sus_scrofa_bamei	ENSSSCP00050043602	99.7908	99.5816
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	94.5607	93.3054	sus_scrofa_wuzhishan	ENSSSCP00005043720	94.3633	93.1106
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	68.2008	68.2008	sus_scrofa_tibetan	ENSSSCP00015034315	99.6942	99.6942
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	99.7908	99.5816	sus_scrofa_rongchang	ENSSSCP00030034631	99.7908	99.5816
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	99.1632	99.1632	sus_scrofa_berkshire	ENSSSCP00065033727	96.5377	96.5377
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	99.7908	99.5816	sus_scrofa_meishan	ENSSSCP00040044747	99.7908	99.5816
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	99.7908	99.5816	sus_scrofa_usmarc	ENSSSCP00070000188	99.7908	99.5816
ENSSSCG00025064846	sus_scrofa_largewhite	ENSSSCP00025038921	99.7908	99.5816	sus_scrofa_jinhua	ENSSSCP00060000628	99.7908	99.5816

Showing 1 to 10 of 14 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs