RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025060028	Gene ID		Accession	-
Symbol	EIF5A	Alias	-	Full Name	NA
Status	Confidence	Length	5362 bases	Strand	Plus strand
Position	LUXX01062832.1 : 381344 - 386705	RNA binding domain	eIF-5a
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025035836	eIF-5a	PF01287	1.9e-25	1
ENSSSCP00025035663	eIF-5a	PF01287	2.6e-25	1
ENSSSCP00025035766	eIF-5a	PF01287	2.5e-21	1
ENSSSCP00025035734	eIF-5a	PF01287	7.5e-18	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
EIF5A-201	ENSSSCT00025082172	1405	184aa	ENSSSCP00025035663
EIF5A-203	ENSSSCT00025082318	1863	311aa	ENSSSCP00025035734
EIF5A-202	ENSSSCT00025082401	1003	183aa	ENSSSCP00025035766
EIF5A-204	ENSSSCT00025082531	1372	154aa	ENSSSCP00025035836

Gene Model

Click here to download ENSSSCG00025060028's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025060028's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025031182	89.5425	79.7386	sus_scrofa_largewhite	ENSSSCP00025035734	44.0514	39.2283

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	100	100	sus_scrofa_pietrain	ENSSSCP00055017280	100	100
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	100	100	sus_scrofa	ENSSSCP00000050524	100	100
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	100	100	sus_scrofa_bamei	ENSSSCP00050002734	100	100
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	46.3022	44.6945	equus_caballus	ENSECAP00000087607	63.4361	61.2335
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	46.3022	44.6945	sus_scrofa_wuzhishan	ENSSSCP00005045046	77.4194	74.7312
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	46.3022	44.6945	sus_scrofa_tibetan	ENSSSCP00015001868	78.2609	75.5435
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	46.3022	44.6945	sus_scrofa_rongchang	ENSSSCP00030048984	78.2609	75.5435
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	51.1254	49.5177	sus_scrofa_berkshire	ENSSSCP00065036255	86.8852	84.153
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	51.1254	49.5177	sus_scrofa_meishan	ENSSSCP00040015105	86.8852	84.153
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	100	100	sus_scrofa_usmarc	ENSSSCP00070035252	100	100
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	100	99.6785	sus_scrofa_jinhua	ENSSSCP00060024703	100	99.6785
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	46.3022	44.6945	sus_scrofa_hampshire	ENSSSCP00035032445	78.2609	75.5435
ENSSSCG00025060028	sus_scrofa_largewhite	ENSSSCP00025035734	100	100	sus_scrofa_landrace	ENSSSCP00045031916	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression