RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025051712	Gene ID		Accession	-
Symbol	MRPL43	Alias	-	Full Name	NA
Status	Confidence	Length	3756 bases	Strand	Plus strand
Position	LUXX01095385.1 : 4254582 - 4258337	RNA binding domain	L51_S25_CI-B8
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025030616	L51_S25_CI-B8	PF05047	2.5e-11	1
ENSSSCP00025030533	L51_S25_CI-B8	PF05047	3.8e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MRPL43-201	ENSSSCT00025070679	708	217aa	ENSSSCP00025030533
MRPL43-202	ENSSSCT00025070774	885	44aa	ENSSSCP00025030590
MRPL43-203	ENSSSCT00025070832	1004	165aa	ENSSSCP00025030616

Gene Model

Click here to download ENSSSCG00025051712's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025051712's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025051712

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_pietrain	ENSSSCP00055005097	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	94.0092	94.0092	sus_scrofa	ENSSSCP00000064040	91.0714	91.0714
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_bamei	ENSSSCP00050047340	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	67.7419	66.3594	equus_caballus	ENSECAP00000027882	42.7326	41.8605
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_wuzhishan	ENSSSCP00005007975	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_tibetan	ENSSSCP00015035440	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_rongchang	ENSSSCP00030006177	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_berkshire	ENSSSCP00065035421	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_meishan	ENSSSCP00040011924	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_usmarc	ENSSSCP00070022152	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_jinhua	ENSSSCP00060003478	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_hampshire	ENSSSCP00035021081	100	100
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	70.5069	68.6636	ovis_aries_rambouillet	ENSOARP00020031509	96.2264	93.7107
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	70.9677	69.1244	bos_taurus	ENSBTAP00000004265	96.8553	94.3396
ENSSSCG00025051712	sus_scrofa_largewhite	ENSSSCP00025030533	100	100	sus_scrofa_landrace	ENSSSCP00045013520	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression