RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025051334	Gene ID		Accession	-
Symbol	FAM172A	Alias	-	Full Name	NA
Status	Confidence	Length	490612 bases	Strand	Minus strand
Position	LUXX01084903.1 : 1036078 - 1526689	RNA binding domain	Arb2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025030848	Arb2	PF09757	1.2e-09	1
ENSSSCP00025030918	Arb2	PF09757	1.3e-09	1
ENSSSCP00025030290	Arb2	PF09757	1.3e-09	1
ENSSSCP00025030785	Arb2	PF09757	1.4e-09	1
ENSSSCP00025030603	Arb2	PF09757	1.5e-09	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FAM172A-201	ENSSSCT00025070194	1870	399aa	ENSSSCP00025030290
FAM172A-207	ENSSSCT00025070430	7294	394aa	ENSSSCP00025030407
FAM172A-206	ENSSSCT00025070566	7168	352aa	ENSSSCP00025030476
FAM172A-205	ENSSSCT00025070706	7102	330aa	ENSSSCP00025030550
FAM172A-204	ENSSSCT00025070804	7325	416aa	ENSSSCP00025030603
FAM172A-203	ENSSSCT00025070890	7208	377aa	ENSSSCP00025030655
FAM172A-202	ENSSSCT00025071015	7106	343aa	ENSSSCP00025030721
FAM172A-208	ENSSSCT00025071149	6382	407aa	ENSSSCP00025030785
FAM172A-209	ENSSSCT00025071267	1954	394aa	ENSSSCP00025030848
FAM172A-210	ENSSSCT00025071393	5104	398aa	ENSSSCP00025030918

Gene Model

Click here to download ENSSSCG00025051334's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025051334's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025026913	59.6817	38.1963	sus_scrofa_largewhite	ENSSSCP00025030603	54.0865	34.6154

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	90.1442	89.1827	sus_scrofa_pietrain	ENSSSCP00055010999	94.2211	93.2161
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	100	100	sus_scrofa	ENSSSCP00000020251	100	100
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	30.2885	25.4808	sus_scrofa_bamei	ENSSSCP00050046973	69.6133	58.5635
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	92.0673	88.9423	equus_caballus	ENSECAP00000045090	77.2177	74.5968
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	100	100	sus_scrofa_wuzhishan	ENSSSCP00005010816	100	100
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	30.2885	25.4808	sus_scrofa_tibetan	ENSSSCP00015035659	69.6133	58.5635
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	100	100	sus_scrofa_rongchang	ENSSSCP00030023453	100	100
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	90.1442	89.1827	sus_scrofa_berkshire	ENSSSCP00065003805	94.2211	93.2161
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	90.1442	89.1827	sus_scrofa_meishan	ENSSSCP00040021991	94.2211	93.2161
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	93.2692	91.8269	sus_scrofa_usmarc	ENSSSCP00070014312	91.0798	89.6714
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	90.1442	89.1827	sus_scrofa_jinhua	ENSSSCP00060006083	94.2211	93.2161
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	100	100	sus_scrofa_hampshire	ENSSSCP00035035968	100	100
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	99.0385	98.3173	ovis_aries_rambouillet	ENSOARP00020008900	99.0385	98.3173
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	99.2788	98.5577	bos_taurus	ENSBTAP00000073551	99.2788	98.5577
ENSSSCG00025051334	sus_scrofa_largewhite	ENSSSCP00025030603	90.1442	89.1827	sus_scrofa_landrace	ENSSSCP00045005748	94.2211	93.2161

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression