Description

Ensembl ID ENSSSCG00025051324 Gene ID Accession -
Symbol MSH2 Alias - Full Name Sus scrofa mutS homolog 2 (MSH2), mRNA.
Status Confidence Length 82290 bases Strand Minus strand
Position LUXX01054371.1 : 2383281 - 2465570 RNA binding domain MutS_II
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00025030542 MutS_II PF05188 5.5e-22 1
ENSSSCP00025030416 MutS_II PF05188 5.6e-22 1
ENSSSCP00025030732 MutS_II PF05188 5.6e-22 1
ENSSSCP00025030646 MutS_II PF05188 6.2e-22 1
ENSSSCP00025030279 MutS_II PF05188 6.9e-22 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
MSH2-201 ENSSSCT00025070169 4061 920aa ENSSSCP00025030279
MSH2-202 ENSSSCT00025070446 2967 821aa ENSSSCP00025030416
MSH2-203 ENSSSCT00025070694 5179 826aa ENSSSCP00025030542
MSH2-204 ENSSSCT00025070877 2889 868aa ENSSSCP00025030646
MSH2-205 ENSSSCT00025071040 2575 822aa ENSSSCP00025030732

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002504398233.214618.5218sus_scrofa_largewhiteENSSSCP0002503027940.543522.6087
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002502975027.806315.4806sus_scrofa_largewhiteENSSSCP0002503027941.195722.9348
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002504777037.125719.2814sus_scrofa_largewhiteENSSSCP0002503027933.695717.5
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002500729346.682526.7773sus_scrofa_largewhiteENSSSCP0002503027921.41312.2826

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027992.282691.6304sus_scrofa_pietrainENSSSCP0005503052897.698597.0081
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027999.891399.8913sus_scrofaENSSSCP0000000899799.891399.8913
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027910099.8913sus_scrofa_bameiENSSSCP0005003146910099.8913
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027989.891386.7391equus_caballusENSECAP0000007220986.325783.2985
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027999.673999.4565sus_scrofa_wuzhishanENSSSCP0000500753793.00292.7992
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027999.782699.7826sus_scrofa_tibetanENSSSCP0001502591199.782699.7826
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027995.760995.1087sus_scrofa_rongchangENSSSCP0003000138298.766898.0942
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027910099.7826sus_scrofa_berkshireENSSSCP0006502236210099.7826
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027999.891399.7826sus_scrofa_meishanENSSSCP0004000630799.891399.7826
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027999.782699.5652sus_scrofa_usmarcENSSSCP0007000109298.286998.0728
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027910099.8913sus_scrofa_jinhuaENSSSCP0006001666710099.8913
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027999.891399.8913sus_scrofa_hampshireENSSSCP0003503115999.891399.8913
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027998.478396.6304ovis_aries_rambouilletENSOARP0002000626096.588594.7761
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027998.91396.6304bos_taurusENSBTAP0000000355697.430495.182
ENSSSCG00025051324sus_scrofa_largewhiteENSSSCP0002503027999.891399.8913sus_scrofa_landraceENSSSCP0004504075099.891399.8913

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression