RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00025051324 | Gene ID |
|
Accession |
- |
Symbol |
MSH2 |
Alias |
- |
Full Name |
Sus scrofa mutS homolog 2 (MSH2), mRNA. |
Status |
Confidence |
Length |
82290 bases |
Strand |
Minus strand |
Position |
LUXX01054371.1 : 2383281 - 2465570 |
RNA binding domain |
MutS_II |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00025030542 |
MutS_II |
PF05188 |
5.5e-22 |
1 |
ENSSSCP00025030416 |
MutS_II |
PF05188 |
5.6e-22 |
1 |
ENSSSCP00025030732 |
MutS_II |
PF05188 |
5.6e-22 |
1 |
ENSSSCP00025030646 |
MutS_II |
PF05188 |
6.2e-22 |
1 |
ENSSSCP00025030279 |
MutS_II |
PF05188 |
6.9e-22 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
MSH2-201 |
ENSSSCT00025070169 |
4061 |
920aa |
ENSSSCP00025030279 |
MSH2-202 |
ENSSSCT00025070446 |
2967 |
821aa |
ENSSSCP00025030416 |
MSH2-203 |
ENSSSCT00025070694 |
5179 |
826aa |
ENSSSCP00025030542 |
MSH2-204 |
ENSSSCT00025070877 |
2889 |
868aa |
ENSSSCP00025030646 |
MSH2-205 |
ENSSSCT00025071040 |
2575 |
822aa |
ENSSSCP00025030732 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025043982 | 33.2146 | 18.5218 | sus_scrofa_largewhite | ENSSSCP00025030279 | 40.5435 | 22.6087 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025029750 | 27.8063 | 15.4806 | sus_scrofa_largewhite | ENSSSCP00025030279 | 41.1957 | 22.9348 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025047770 | 37.1257 | 19.2814 | sus_scrofa_largewhite | ENSSSCP00025030279 | 33.6957 | 17.5 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025007293 | 46.6825 | 26.7773 | sus_scrofa_largewhite | ENSSSCP00025030279 | 21.413 | 12.2826 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 92.2826 | 91.6304 | sus_scrofa_pietrain | ENSSSCP00055030528 | 97.6985 | 97.0081 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 99.8913 | 99.8913 | sus_scrofa | ENSSSCP00000008997 | 99.8913 | 99.8913 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 100 | 99.8913 | sus_scrofa_bamei | ENSSSCP00050031469 | 100 | 99.8913 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 89.8913 | 86.7391 | equus_caballus | ENSECAP00000072209 | 86.3257 | 83.2985 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 99.6739 | 99.4565 | sus_scrofa_wuzhishan | ENSSSCP00005007537 | 93.002 | 92.7992 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 99.7826 | 99.7826 | sus_scrofa_tibetan | ENSSSCP00015025911 | 99.7826 | 99.7826 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 95.7609 | 95.1087 | sus_scrofa_rongchang | ENSSSCP00030001382 | 98.7668 | 98.0942 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 100 | 99.7826 | sus_scrofa_berkshire | ENSSSCP00065022362 | 100 | 99.7826 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 99.8913 | 99.7826 | sus_scrofa_meishan | ENSSSCP00040006307 | 99.8913 | 99.7826 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 99.7826 | 99.5652 | sus_scrofa_usmarc | ENSSSCP00070001092 | 98.2869 | 98.0728 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 100 | 99.8913 | sus_scrofa_jinhua | ENSSSCP00060016667 | 100 | 99.8913 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 99.8913 | 99.8913 | sus_scrofa_hampshire | ENSSSCP00035031159 | 99.8913 | 99.8913 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 98.4783 | 96.6304 | ovis_aries_rambouillet | ENSOARP00020006260 | 96.5885 | 94.7761 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 98.913 | 96.6304 | bos_taurus | ENSBTAP00000003556 | 97.4304 | 95.182 |
ENSSSCG00025051324 | sus_scrofa_largewhite | ENSSSCP00025030279 | 99.8913 | 99.8913 | sus_scrofa_landrace | ENSSSCP00045040750 | 99.8913 | 99.8913 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |