RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025044231	Gene ID		Accession	-
Symbol	PTCD2	Alias	-	Full Name	NA
Status	Confidence	Length	31227 bases	Strand	Plus strand
Position	LUXX01057268.1 : 2449086 - 2480312	RNA binding domain	MRP-S27
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025025541	MRP-S27	PF10037	2.9e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PTCD2-201	ENSSSCT00025060246	2055	425aa	ENSSSCP00025025541
PTCD2-202	ENSSSCT00025060444	1393	277aa	ENSSSCP00025025643
PTCD2-203	ENSSSCT00025060578	1428	216aa	ENSSSCP00025025703

Gene Model

Click here to download ENSSSCG00025044231's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025044231's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025044231

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	89.6471	89.6471	sus_scrofa_pietrain	ENSSSCP00055041804	100	100
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	89.6471	89.6471	sus_scrofa	ENSSSCP00000017985	100	100
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	89.4118	89.4118	sus_scrofa_bamei	ENSSSCP00050037220	99.7375	99.7375
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	82.8235	75.7647	equus_caballus	ENSECAP00000041262	92.1466	84.2932
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	99.5294	99.2941	sus_scrofa_wuzhishan	ENSSSCP00005007247	99.5294	99.2941
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	89.4118	89.4118	sus_scrofa_tibetan	ENSSSCP00015019889	99.7375	99.7375
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	93.1765	92.9412	sus_scrofa_rongchang	ENSSSCP00030032968	95.6522	95.4106
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	100	100	sus_scrofa_berkshire	ENSSSCP00065044210	100	100
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	89.4118	89.4118	sus_scrofa_meishan	ENSSSCP00040017229	99.7375	99.7375
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	100	100	sus_scrofa_usmarc	ENSSSCP00070027211	100	100
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	99.2941	98.8235	sus_scrofa_jinhua	ENSSSCP00060019585	99.2941	98.8235
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	99.5294	99.5294	sus_scrofa_hampshire	ENSSSCP00035026743	99.5294	99.5294
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	84.7059	77.6471	ovis_aries_rambouillet	ENSOARP00020029832	92.545	84.8329
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	83.5294	76.7059	bos_taurus	ENSBTAP00000019535	92.4479	84.8958
ENSSSCG00025044231	sus_scrofa_largewhite	ENSSSCP00025025541	100	100	sus_scrofa_landrace	ENSSSCP00045032332	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression