RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025042819	Gene ID		Accession	-
Symbol	MRPS27	Alias	-	Full Name	NA
Status	Confidence	Length	161127 bases	Strand	Minus strand
Position	LUXX01057268.1 : 2325580 - 2486706	RNA binding domain	MRP-S27
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025024666	MRP-S27	PF10037	4.1e-158	1
ENSSSCP00025024842	MRP-S27	PF10037	2.7e-153	1
ENSSSCP00025025133	MRP-S27	PF10037	3e-153	1
ENSSSCP00025025007	MRP-S27	PF10037	3.9e-153	1
ENSSSCP00025025229	MRP-S27	PF10037	5.5e-94	1
ENSSSCP00025025311	MRP-S27	PF10037	2.2e-35	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MRPS27-202	ENSSSCT00025058293	7531	455aa	ENSSSCP00025024666
MRPS27-201	ENSSSCT00025058656	7066	395aa	ENSSSCP00025024842
MRPS27-203	ENSSSCT00025058992	2871	394aa	ENSSSCP00025025007
MRPS27-204	ENSSSCT00025059239	2207	426aa	ENSSSCP00025025133
MRPS27-205	ENSSSCT00025059476	1693	197aa	ENSSSCP00025025229
MRPS27-206	ENSSSCT00025059667	1556	100aa	ENSSSCP00025025311

Gene Model

Click here to download ENSSSCG00025042819's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025042819's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025042819

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	100	100	sus_scrofa_pietrain	ENSSSCP00055040944	100	100
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	100	100	sus_scrofa	ENSSSCP00000080721	97.0149	97.0149
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	91.2088	91.2088	sus_scrofa_bamei	ENSSSCP00050037127	97.4178	97.4178
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	81.978	74.0659	equus_caballus	ENSECAP00000006254	87.1495	78.7383
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	99.7802	99.7802	sus_scrofa_wuzhishan	ENSSSCP00005007124	99.7802	99.7802
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	96.9231	96.9231	sus_scrofa_tibetan	ENSSSCP00015019078	84.1603	84.1603
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	98.022	98.022	sus_scrofa_rongchang	ENSSSCP00030032822	85.1145	85.1145
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	100	100	sus_scrofa_berkshire	ENSSSCP00065043827	100	100
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	91.2088	91.2088	sus_scrofa_meishan	ENSSSCP00040016975	97.4178	97.4178
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	100	100	sus_scrofa_usmarc	ENSSSCP00070027124	100	100
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	99.5604	99.5604	sus_scrofa_jinhua	ENSSSCP00060019164	99.5604	99.5604
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	99.7802	99.7802	sus_scrofa_hampshire	ENSSSCP00035026487	99.7802	99.7802
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	85.7143	79.5604	ovis_aries_rambouillet	ENSOARP00020029878	93.9759	87.2289
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	88.7912	83.0769	bos_taurus	ENSBTAP00000002549	86.1407	80.597
ENSSSCG00025042819	sus_scrofa_largewhite	ENSSSCP00025024666	100	100	sus_scrofa_landrace	ENSSSCP00045031459	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression