RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025041954	Gene ID		Accession	-
Symbol	RPSA	Alias	-	Full Name	40S ribosomal protein SA
Status	Confidence	Length	16136 bases	Strand	Minus strand
Position	LUXX01080090.1 : 51382 - 67517	RNA binding domain	Ribosomal_S2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025024100	Ribosomal_S2	PF00318	7.7e-24	1
ENSSSCP00025024100	Ribosomal_S2	PF00318	7.7e-24	2
ENSSSCP00025024065	Ribosomal_S2	PF00318	1e-23	1
ENSSSCP00025024065	Ribosomal_S2	PF00318	1e-23	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
RPSA-201	ENSSSCT00025056901	4452	295aa	ENSSSCP00025024065
RPSA-202	ENSSSCT00025057000	1516	275aa	ENSSSCP00025024100

Gene Model

Click here to download ENSSSCG00025041954's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025041954's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025041954

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	99.661	98.983	sus_scrofa_pietrain	ENSSSCP00055019309	100	99.3197
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	100	100	sus_scrofa	ENSSSCP00000059243	100	100
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	100	99.661	sus_scrofa_bamei	ENSSSCP00050033263	100	99.661
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	83.3898	80.678	equus_caballus	ENSECAP00000017569	87.8571	85
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	95.2542	94.2373	equus_caballus	ENSECAP00000037174	98.2517	97.2028
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	99.322	99.322	equus_caballus	ENSECAP00000011005	99.6599	99.6599
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	100	100	sus_scrofa_wuzhishan	ENSSSCP00005037244	100	100
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	100	100	sus_scrofa_tibetan	ENSSSCP00015039007	100	100
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	100	100	sus_scrofa_berkshire	ENSSSCP00065047547	100	100
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	100	100	sus_scrofa_usmarc	ENSSSCP00070018383	100	100
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	99.661	98.983	sus_scrofa_jinhua	ENSSSCP00060039271	100	99.3197
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	100	100	sus_scrofa_hampshire	ENSSSCP00035031316	100	100
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	34.2373	31.1864	ovis_aries_rambouillet	ENSOARP00020005578	80.1587	73.0159
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	99.661	99.322	ovis_aries_rambouillet	ENSOARP00020023166	99.661	99.322
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	99.322	98.983	ovis_aries_rambouillet	ENSOARP00020033780	99.322	98.983
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	83.3898	80.678	ovis_aries_rambouillet	ENSOARP00020023954	90.4412	87.5
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	99.661	99.322	bos_taurus	ENSBTAP00000072944	93.3333	93.0159
ENSSSCG00025041954	sus_scrofa_largewhite	ENSSSCP00025024065	99.661	98.983	sus_scrofa_landrace	ENSSSCP00045006042	100	99.3197

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression