Description

Ensembl ID ENSSSCG00025033022 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 8968 bases Strand Minus strand
Position LUXX01049411.1 : 682180 - 691147 RNA binding domain ResIII , DEAD , RIG-I_C , RIG-I_C-RD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00025019266 ResIII PF04851 5.5e-21 1
ENSSSCP00025019266 DEAD PF00270 5.1e-18 2
ENSSSCP00025019266 RIG-I_C PF18119 1.7e-33 3
ENSSSCP00025019266 RIG-I_C-RD PF11648 3.4e-35 4
ENSSSCP00025019188 ResIII PF04851 6.5e-21 1
ENSSSCP00025019188 DEAD PF00270 3.6e-18 2
ENSSSCP00025019188 RIG-I_C PF18119 2e-33 3
ENSSSCP00025019188 RIG-I_C-RD PF11648 3.7e-35 4
ENSSSCP00025019150 ResIII PF04851 7.1e-21 1
ENSSSCP00025019150 DEAD PF00270 5.1e-18 2
ENSSSCP00025019150 RIG-I_C PF18119 7e-34 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSSSCT00025044955 3588 634aa ENSSSCP00025019150
- ENSSSCT00025045039 2737 681aa ENSSSCP00025019188
- ENSSSCT00025045201 2280 631aa ENSSSCP00025019266

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002503623442.424228.6413sus_scrofa_largewhiteENSSSCP0002501918863.729843.025
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002504057036.479322.6935sus_scrofa_largewhiteENSSSCP0002501918850.51431.4244

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918892.217391.3363sus_scrofa_pietrainENSSSCP0005504653296.913695.9877
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918810099.8532sus_scrofaENSSSCP0000001845510099.8532
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918894.713792.8047sus_scrofa_bameiENSSSCP0005004066594.713792.8047
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918899.853299.7063sus_scrofa_wuzhishanENSSSCP0000501797099.853299.7063
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918899.853299.7063sus_scrofa_tibetanENSSSCP0001501726897.281897.1388
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918899.853299.8532sus_scrofa_rongchangENSSSCP0003004315799.853299.8532
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918892.070591.1894sus_scrofa_berkshireENSSSCP0006500389296.759395.8333
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918899.853299.7063sus_scrofa_meishanENSSSCP0004001186299.853299.7063
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918810099.8532sus_scrofa_usmarcENSSSCP0007002363610099.8532
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918899.853299.7063sus_scrofa_jinhuaENSSSCP0006000790399.853299.7063
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918810099.8532sus_scrofa_hampshireENSSSCP0003500984210099.8532
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918889.574284.5815ovis_aries_rambouilletENSOARP0002000406289.705984.7059
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918886.93180.1762bos_taurusENSBTAP0000005390982.566276.1506
ENSSSCG00025033022sus_scrofa_largewhiteENSSSCP0002501918810099.8532sus_scrofa_landraceENSSSCP0004504678310099.8532

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression