RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025028492	Gene ID		Accession	-
Symbol	MRPS25	Alias	-	Full Name	NA
Status	Confidence	Length	26629 bases	Strand	Minus strand
Position	LUXX01051355.1 : 412583 - 439211	RNA binding domain	L51_S25_CI-B8
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025016352	L51_S25_CI-B8	PF05047	2.9e-11	1
ENSSSCP00025016385	L51_S25_CI-B8	PF05047	3.6e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MRPS25-201	ENSSSCT00025038684	5589	173aa	ENSSSCP00025016352
MRPS25-202	ENSSSCT00025038740	2515	192aa	ENSSSCP00025016385

Gene Model

Click here to download ENSSSCG00025028492's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025028492's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025028492

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_pietrain	ENSSSCP00055034194	100	100
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	77.0833	76.0417	sus_scrofa	ENSSSCP00000065116	85.5491	84.3931
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_bamei	ENSSSCP00050041697	100	100
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	76.5625	72.3958	equus_caballus	ENSECAP00000018267	45.2308	42.7692
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_wuzhishan	ENSSSCP00005031306	100	100
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_tibetan	ENSSSCP00015037236	100	100
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_rongchang	ENSSSCP00030027957	100	100
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_berkshire	ENSSSCP00065013245	100	100
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_meishan	ENSSSCP00040032521	100	100
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	76.5625	76.0417	sus_scrofa_usmarc	ENSSSCP00070025567	84.9711	84.3931
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_jinhua	ENSSSCP00060028174	100	100
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_hampshire	ENSSSCP00035044813	100	100
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	74.4792	68.2292	ovis_aries_rambouillet	ENSOARP00020033721	82.659	75.7225
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	75	68.75	bos_taurus	ENSBTAP00000018234	83.237	76.3006
ENSSSCG00025028492	sus_scrofa_largewhite	ENSSSCP00025016385	100	100	sus_scrofa_landrace	ENSSSCP00045016871	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression