RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00025025685	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Sus scrofa ribonuclease H2 subunit B (RNASEH2B), mRNA.
Status	Confidence	Length	86753 bases	Strand	Plus strand
Position	LUXX01050138.1 : 248206 - 334958	RNA binding domain	RNase_H2-Ydr279
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025014446	RNase_H2-Ydr279	PF09468	4e-15	1
ENSSSCP00025014537	RNase_H2-Ydr279	PF09468	4.6e-15	1
ENSSSCP00025014738	RNase_H2-Ydr279	PF09468	2.3e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00025034686	6370	250aa	ENSSSCP00025014446
-	ENSSSCT00025034889	1460	305aa	ENSSSCP00025014537
-	ENSSSCT00025035049	1039	274aa	ENSSSCP00025014609
-	ENSSSCT00025035188	1782	275aa	ENSSSCP00025014672
-	ENSSSCT00025035334	6753	314aa	ENSSSCP00025014738
-	ENSSSCT00025035436	703	128aa	ENSSSCP00025014791

Gene Model

Click here to download ENSSSCG00025025685's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025025685's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025025685

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	100	100	sus_scrofa_pietrain	ENSSSCP00055004282	100	100
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	72.6115	66.879	sus_scrofa	ENSSSCP00000032108	74.7541	68.8525
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	99.6815	99.6815	sus_scrofa_bamei	ENSSSCP00050039737	94.5619	94.5619
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	69.4268	60.1911	equus_caballus	ENSECAP00000090595	60.0551	52.0661
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	61.1465	58.9172	sus_scrofa_wuzhishan	ENSSSCP00005027890	91.866	88.5167
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	64.3312	58.5987	sus_scrofa_tibetan	ENSSSCP00015024828	72.4014	65.9498
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	99.6815	99.6815	sus_scrofa_rongchang	ENSSSCP00030033696	93.4328	93.4328
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	99.6815	99.6815	sus_scrofa_berkshire	ENSSSCP00065004461	94.5619	94.5619
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	72.6115	66.879	sus_scrofa_meishan	ENSSSCP00040016692	54.1568	49.8812
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	63.0573	55.0955	sus_scrofa_usmarc	ENSSSCP00070003813	62.6582	54.7468
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	68.1529	61.7834	sus_scrofa_jinhua	ENSSSCP00060015326	64.6526	58.6103
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	100	100	sus_scrofa_hampshire	ENSSSCP00035010000	100	100
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	68.4713	57.6433	ovis_aries_rambouillet	ENSOARP00020017265	68.6901	57.8275
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	67.5159	57.0064	bos_taurus	ENSBTAP00000026838	68.6084	57.9288
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	12.7389	6.6879	bos_taurus	ENSBTAP00000055531	31.0078	16.2791
ENSSSCG00025025685	sus_scrofa_largewhite	ENSSSCP00025014738	99.6815	99.6815	sus_scrofa_landrace	ENSSSCP00045016150	94.5619	94.5619

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression