RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025021971	Gene ID		Accession	-
Symbol	CPSF3	Alias	-	Full Name	NA
Status	Confidence	Length	37371 bases	Strand	Plus strand
Position	LUXX01008719.1 : 1194513 - 1231883	RNA binding domain	Lactamase_B , Beta-Casp , CPSF73-100_C , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025012718	Lactamase_B	PF00753	3.1e-18	1
ENSSSCP00025012718	Beta-Casp	PF10996	1.5e-31	2
ENSSSCP00025012718	CPSF73-100_C	PF11718	2.5e-39	3
ENSSSCP00025012718	RMMBL	PF07521	6.6e-15	4
ENSSSCP00025012746	Lactamase_B	PF00753	3.6e-18	1
ENSSSCP00025012746	Beta-Casp	PF10996	1.7e-31	2
ENSSSCP00025012746	CPSF73-100_C	PF11718	5.5e-55	3
ENSSSCP00025012746	RMMBL	PF07521	5.4e-15	4
ENSSSCP00025012707	Lactamase_B	PF00753	6.5e-15	1
ENSSSCP00025012707	Beta-Casp	PF10996	1.5e-31	2
ENSSSCP00025012707	CPSF73-100_C	PF11718	5.1e-55	3
ENSSSCP00025012707	RMMBL	PF07521	5e-15	4
ENSSSCP00025012732	Lactamase_B	PF00753	5.6e-08	1
ENSSSCP00025012732	Beta-Casp	PF10996	1.5e-31	2
ENSSSCP00025012732	CPSF73-100_C	PF11718	4.8e-55	3
ENSSSCP00025012732	RMMBL	PF07521	4.8e-15	4
ENSSSCP00025012726	Beta-Casp	PF10996	1.3e-31	1
ENSSSCP00025012726	CPSF73-100_C	PF11718	4e-55	2
ENSSSCP00025012726	RMMBL	PF07521	4.1e-15	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
CPSF3-202	ENSSSCT00025029890	2698	647aa	ENSSSCP00025012707
CPSF3-201	ENSSSCT00025029912	4753	619aa	ENSSSCP00025012718
CPSF3-203	ENSSSCT00025029925	3104	582aa	ENSSSCP00025012726
CPSF3-204	ENSSSCT00025029946	2386	630aa	ENSSSCP00025012732
CPSF3-205	ENSSSCT00025029980	2512	672aa	ENSSSCP00025012746

Gene Model

Click here to download ENSSSCG00025021971's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025021971's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025041479	50.384	31.9508	sus_scrofa_largewhite	ENSSSCP00025012746	48.8095	30.9524
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025000236	34.7826	17.5192	sus_scrofa_largewhite	ENSSSCP00025012746	40.4762	20.3869
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025023043	36.5591	20.5837	sus_scrofa_largewhite	ENSSSCP00025012746	35.4167	19.9405

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.7024	99.5536	sus_scrofa_pietrain	ENSSSCP00055014309	97.6676	97.5219
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.4048	99.256	sus_scrofa	ENSSSCP00000024676	93.8202	93.6798
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.5536	99.4048	sus_scrofa_bamei	ENSSSCP00050011350	97.5219	97.3761
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	95.0893	94.494	equus_caballus	ENSECAP00000033707	93.9706	93.3824
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.7024	99.5536	sus_scrofa_wuzhishan	ENSSSCP00005005627	97.6676	97.5219
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	100	100	sus_scrofa_tibetan	ENSSSCP00015042505	100	100
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.7024	99.5536	sus_scrofa_rongchang	ENSSSCP00030033830	97.6676	97.5219
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	100	100	sus_scrofa_berkshire	ENSSSCP00065014754	100	100
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.4048	99.256	sus_scrofa_meishan	ENSSSCP00040026252	97.6608	97.5146
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.4048	99.256	sus_scrofa_usmarc	ENSSSCP00070027339	97.6608	97.5146
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.5536	99.4048	sus_scrofa_jinhua	ENSSSCP00060029733	97.0972	96.9521
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.4048	99.256	sus_scrofa_hampshire	ENSSSCP00035004796	97.6608	97.5146
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.1071	98.8095	ovis_aries_rambouillet	ENSOARP00020010488	97.3684	97.076
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.1071	98.8095	bos_taurus	ENSBTAP00000026303	97.3684	97.076
ENSSSCG00025021971	sus_scrofa_largewhite	ENSSSCP00025012746	99.5536	99.4048	sus_scrofa_landrace	ENSSSCP00045029715	96.8162	96.6715

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression