Description

Ensembl ID ENSSSCG00025021239 Gene ID Accession -
Symbol RFX4 Alias - Full Name NA
Status Confidence Length 121731 bases Strand Plus strand
Position LUXX01038740.1 : 2658381 - 2780111 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00025012246 RNA_pol_Rpb2_1 PF04563 8.5e-54 1
ENSSSCP00025012246 RNA_pol_Rpb2_3 PF04565 4.5e-20 2
ENSSSCP00025012246 RNA_pol_Rpb2_7 PF04560 4.6e-19 3
ENSSSCP00025012246 RNA_pol_Rpb2_2 PF04561 2.2e-27 4
ENSSSCP00025012246 RNA_pol_Rpb2_6 PF00562 5.6e-127 5
ENSSSCP00025012246 RNA_pol_Rpb2_4 PF04566 1.8e-26 6
ENSSSCP00025012246 RNA_pol_Rpb2_5 PF04567 2.9e-07 7
ENSSSCP00025012256 RNA_pol_Rpb2_1 PF04563 8.8e-54 1
ENSSSCP00025012256 RNA_pol_Rpb2_3 PF04565 4.6e-20 2
ENSSSCP00025012256 RNA_pol_Rpb2_7 PF04560 1.4e-34 3
ENSSSCP00025012256 RNA_pol_Rpb2_2 PF04561 2.3e-27 4
ENSSSCP00025012256 RNA_pol_Rpb2_6 PF00562 5.8e-127 5
ENSSSCP00025012256 RNA_pol_Rpb2_4 PF04566 1.8e-26 6
ENSSSCP00025012256 RNA_pol_Rpb2_5 PF04567 2.2e-07 7
ENSSSCP00025012280 RNA_pol_Rpb2_1 PF04563 1.1e-44 1
ENSSSCP00025012280 RNA_pol_Rpb2_3 PF04565 4e-20 2
ENSSSCP00025012280 RNA_pol_Rpb2_7 PF04560 2.8e-18 3
ENSSSCP00025012280 RNA_pol_Rpb2_2 PF04561 1.9e-27 4
ENSSSCP00025012280 RNA_pol_Rpb2_6 PF00562 4.6e-127 5
ENSSSCP00025012280 RNA_pol_Rpb2_4 PF04566 1.6e-26 6
ENSSSCP00025012280 RNA_pol_Rpb2_5 PF04567 2.1e-07 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RFX4-201 ENSSSCT00025028868 3438 1119aa ENSSSCP00025012246
RFX4-202 ENSSSCT00025028894 4095 1133aa ENSSSCP00025012256
RFX4-203 ENSSSCT00025028936 5845 1033aa ENSSSCP00025012280

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP0002500510055.395735.8913sus_scrofa_largewhiteENSSSCP0002501225661.16539.6293
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP0002500213645.02229.5154sus_scrofa_largewhiteENSSSCP0002501225645.101529.5675

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP0002501225699.029199.0291sus_scrofa_pietrainENSSSCP00055026911100100
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP00025012256100100sus_scrofaENSSSCP00000023225100100
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP00025012256100100sus_scrofa_bameiENSSSCP0005003382797.588397.5883
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP0002501225610099.8235equus_caballusENSECAP0000001662998.521798.3478
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP0002501225696.204896.2048sus_scrofa_wuzhishanENSSSCP0000500946395.530295.5302
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP0002501225697.087496.6461sus_scrofa_tibetanENSSSCP0001503118498.743398.2944
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP00025012256100100sus_scrofa_rongchangENSSSCP0003001501797.588397.5883
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP00025012256100100sus_scrofa_berkshireENSSSCP00065029541100100
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP00025012256100100sus_scrofa_meishanENSSSCP00040025763100100
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP00025012256100100sus_scrofa_usmarcENSSSCP00070052403100100
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP00025012256100100sus_scrofa_jinhuaENSSSCP00060006825100100
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP0002501225696.29396.293sus_scrofa_hampshireENSSSCP00035029653100100
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP0002501225699.911799.5587ovis_aries_rambouilletENSOARP0002002076299.911799.5587
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP0002501225610099.7352bos_taurusENSBTAP0000003786210099.7352
ENSSSCG00025021239sus_scrofa_largewhiteENSSSCP00025012256100100sus_scrofa_landraceENSSSCP00045012253100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression