| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSSSCG00025021239 | Gene ID |
|
Accession |
- |
| Symbol |
RFX4 |
Alias |
- |
Full Name |
NA |
| Status |
Confidence |
Length |
121731 bases |
Strand |
Plus strand |
| Position |
LUXX01038740.1 : 2658381 - 2780111 |
RNA binding domain |
RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSSSCP00025012246 |
RNA_pol_Rpb2_1 |
PF04563 |
8.5e-54 |
1 |
| ENSSSCP00025012246 |
RNA_pol_Rpb2_3 |
PF04565 |
4.5e-20 |
2 |
| ENSSSCP00025012246 |
RNA_pol_Rpb2_7 |
PF04560 |
4.6e-19 |
3 |
| ENSSSCP00025012246 |
RNA_pol_Rpb2_2 |
PF04561 |
2.2e-27 |
4 |
| ENSSSCP00025012246 |
RNA_pol_Rpb2_6 |
PF00562 |
5.6e-127 |
5 |
| ENSSSCP00025012246 |
RNA_pol_Rpb2_4 |
PF04566 |
1.8e-26 |
6 |
| ENSSSCP00025012246 |
RNA_pol_Rpb2_5 |
PF04567 |
2.9e-07 |
7 |
| ENSSSCP00025012256 |
RNA_pol_Rpb2_1 |
PF04563 |
8.8e-54 |
1 |
| ENSSSCP00025012256 |
RNA_pol_Rpb2_3 |
PF04565 |
4.6e-20 |
2 |
| ENSSSCP00025012256 |
RNA_pol_Rpb2_7 |
PF04560 |
1.4e-34 |
3 |
| ENSSSCP00025012256 |
RNA_pol_Rpb2_2 |
PF04561 |
2.3e-27 |
4 |
| ENSSSCP00025012256 |
RNA_pol_Rpb2_6 |
PF00562 |
5.8e-127 |
5 |
| ENSSSCP00025012256 |
RNA_pol_Rpb2_4 |
PF04566 |
1.8e-26 |
6 |
| ENSSSCP00025012256 |
RNA_pol_Rpb2_5 |
PF04567 |
2.2e-07 |
7 |
| ENSSSCP00025012280 |
RNA_pol_Rpb2_1 |
PF04563 |
1.1e-44 |
1 |
| ENSSSCP00025012280 |
RNA_pol_Rpb2_3 |
PF04565 |
4e-20 |
2 |
| ENSSSCP00025012280 |
RNA_pol_Rpb2_7 |
PF04560 |
2.8e-18 |
3 |
| ENSSSCP00025012280 |
RNA_pol_Rpb2_2 |
PF04561 |
1.9e-27 |
4 |
| ENSSSCP00025012280 |
RNA_pol_Rpb2_6 |
PF00562 |
4.6e-127 |
5 |
| ENSSSCP00025012280 |
RNA_pol_Rpb2_4 |
PF04566 |
1.6e-26 |
6 |
| ENSSSCP00025012280 |
RNA_pol_Rpb2_5 |
PF04567 |
2.1e-07 |
7 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| RFX4-201 |
ENSSSCT00025028868 |
3438 |
1119aa |
ENSSSCP00025012246 |
| RFX4-202 |
ENSSSCT00025028894 |
4095 |
1133aa |
ENSSSCP00025012256 |
| RFX4-203 |
ENSSSCT00025028936 |
5845 |
1033aa |
ENSSSCP00025012280 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025005100 | 55.3957 | 35.8913 | sus_scrofa_largewhite | ENSSSCP00025012256 | 61.165 | 39.6293 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025002136 | 45.022 | 29.5154 | sus_scrofa_largewhite | ENSSSCP00025012256 | 45.1015 | 29.5675 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 99.0291 | 99.0291 | sus_scrofa_pietrain | ENSSSCP00055026911 | 100 | 100 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 100 | sus_scrofa | ENSSSCP00000023225 | 100 | 100 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 100 | sus_scrofa_bamei | ENSSSCP00050033827 | 97.5883 | 97.5883 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 99.8235 | equus_caballus | ENSECAP00000016629 | 98.5217 | 98.3478 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 96.2048 | 96.2048 | sus_scrofa_wuzhishan | ENSSSCP00005009463 | 95.5302 | 95.5302 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 97.0874 | 96.6461 | sus_scrofa_tibetan | ENSSSCP00015031184 | 98.7433 | 98.2944 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 100 | sus_scrofa_rongchang | ENSSSCP00030015017 | 97.5883 | 97.5883 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 100 | sus_scrofa_berkshire | ENSSSCP00065029541 | 100 | 100 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 100 | sus_scrofa_meishan | ENSSSCP00040025763 | 100 | 100 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 100 | sus_scrofa_usmarc | ENSSSCP00070052403 | 100 | 100 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 100 | sus_scrofa_jinhua | ENSSSCP00060006825 | 100 | 100 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 96.293 | 96.293 | sus_scrofa_hampshire | ENSSSCP00035029653 | 100 | 100 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 99.9117 | 99.5587 | ovis_aries_rambouillet | ENSOARP00020020762 | 99.9117 | 99.5587 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 99.7352 | bos_taurus | ENSBTAP00000037862 | 100 | 99.7352 |
| ENSSSCG00025021239 | sus_scrofa_largewhite | ENSSSCP00025012256 | 100 | 100 | sus_scrofa_landrace | ENSSSCP00045012253 | 100 | 100 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |