RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025007018	Gene ID		Accession	-
Symbol	TRMT61A	Alias	-	Full Name	NA
Status	Confidence	Length	8771 bases	Strand	Minus strand
Position	LUXX01016603.1 : 82251 - 91021	RNA binding domain	GCD14
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025003691	GCD14	PF08704	1.3e-103	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TRMT61A-201	ENSSSCT00025009327	2269	285aa	ENSSSCP00025003691

Gene Model

Click here to download ENSSSCG00025007018's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025007018's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025027638	25.2033	14.0244	sus_scrofa_largewhite	ENSSSCP00025003691	43.5088	24.2105

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa_pietrain	ENSSSCP00055038107	100	100
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa	ENSSSCP00000037104	100	100
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa_bamei	ENSSSCP00050042176	100	100
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	98.9474	98.2456	equus_caballus	ENSECAP00000010313	83.9286	83.3333
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	64.9123	63.5088	sus_scrofa_wuzhishan	ENSSSCP00005019637	88.9423	87.0192
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa_tibetan	ENSSSCP00015011157	100	100
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	99.6491	99.6491	sus_scrofa_rongchang	ENSSSCP00030022182	99.6491	99.6491
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa_berkshire	ENSSSCP00065019312	100	100
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa_meishan	ENSSSCP00040047008	100	100
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa_usmarc	ENSSSCP00070019208	100	100
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa_jinhua	ENSSSCP00060009497	100	100
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa_hampshire	ENSSSCP00035037316	100	100
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	97.8947	96.4912	ovis_aries_rambouillet	ENSOARP00020021333	97.8947	96.4912
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	96.8421	96.1404	bos_taurus	ENSBTAP00000041889	96.8421	96.1404
ENSSSCG00025007018	sus_scrofa_largewhite	ENSSSCP00025003691	100	100	sus_scrofa_landrace	ENSSSCP00045014248	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression