RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025006633	Gene ID		Accession	-
Symbol	MRPL50	Alias	-	Full Name	NA
Status	Confidence	Length	6979 bases	Strand	Minus strand
Position	LUXX01009708.1 : 57803 - 64781	RNA binding domain	Ribosomal_L50
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025003439	Ribosomal_L50	PF10501	4.5e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MRPL50-201	ENSSSCT00025008759	3152	198aa	ENSSSCP00025003439

Gene Model

Click here to download ENSSSCG00025006633's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025006633's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025006633

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	100	100	sus_scrofa_pietrain	ENSSSCP00055029871	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	100	100	sus_scrofa	ENSSSCP00000020688	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	71.2121	69.697	sus_scrofa_bamei	ENSSSCP00050014154	78.771	77.095
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	71.7172	67.6768	equus_caballus	ENSECAP00000056131	89.8734	84.8101
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	80.303	80.303	sus_scrofa_wuzhishan	ENSSSCP00005021549	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	80.303	80.303	sus_scrofa_tibetan	ENSSSCP00015045376	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	80.303	80.303	sus_scrofa_rongchang	ENSSSCP00030036734	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	80.303	80.303	sus_scrofa_berkshire	ENSSSCP00065043196	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	80.303	80.303	sus_scrofa_meishan	ENSSSCP00040021401	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	100	100	sus_scrofa_usmarc	ENSSSCP00070040214	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	80.303	80.303	sus_scrofa_jinhua	ENSSSCP00060014080	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	80.303	80.303	sus_scrofa_hampshire	ENSSSCP00035035290	100	100
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	73.2323	66.6667	ovis_aries_rambouillet	ENSOARP00020003777	91.195	83.0189
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	74.7475	68.6869	bos_taurus	ENSBTAP00000011798	93.0818	85.5346
ENSSSCG00025006633	sus_scrofa_largewhite	ENSSSCP00025003439	80.303	80.303	sus_scrofa_landrace	ENSSSCP00045011314	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression