RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | ENSSSCG00025004108 | Gene ID |
|
Accession |
- |
Symbol |
POLR1B |
Alias |
- |
Full Name |
NA |
Status |
Confidence |
Length |
27037 bases |
Strand |
Plus strand |
Position |
LUXX01011191.1 : 927757 - 954793 |
RNA binding domain |
RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
ENSSSCP00025002144 |
RNA_pol_Rpb2_1 |
PF04563 |
1.7e-36 |
1 |
ENSSSCP00025002144 |
RNA_pol_Rpb2_3 |
PF04565 |
2.8e-28 |
2 |
ENSSSCP00025002144 |
RNA_pol_Rpb2_7 |
PF04560 |
7.7e-22 |
3 |
ENSSSCP00025002144 |
RNA_pol_Rpb2_2 |
PF04561 |
3.5e-12 |
4 |
ENSSSCP00025002144 |
RNA_pol_Rpb2_6 |
PF00562 |
1.4e-117 |
5 |
ENSSSCP00025002136 |
RNA_pol_Rpb2_1 |
PF04563 |
1.9e-36 |
1 |
ENSSSCP00025002136 |
RNA_pol_Rpa2_4 |
PF06883 |
6.7e-20 |
2 |
ENSSSCP00025002136 |
RNA_pol_Rpb2_3 |
PF04565 |
3e-28 |
3 |
ENSSSCP00025002136 |
RNA_pol_Rpb2_7 |
PF04560 |
8.4e-22 |
4 |
ENSSSCP00025002136 |
RNA_pol_Rpb2_2 |
PF04561 |
3.8e-12 |
5 |
ENSSSCP00025002136 |
RNA_pol_Rpb2_6 |
PF00562 |
1.6e-117 |
6 |
ENSSSCP00025002129 |
RNA_pol_Rpb2_1 |
PF04563 |
1.7e-33 |
1 |
ENSSSCP00025002129 |
RNA_pol_Rpa2_4 |
PF06883 |
3.6e-11 |
2 |
ENSSSCP00025002129 |
RNA_pol_Rpb2_7 |
PF04560 |
6.6e-22 |
3 |
ENSSSCP00025002129 |
RNA_pol_Rpb2_2 |
PF04561 |
2.9e-12 |
4 |
ENSSSCP00025002129 |
RNA_pol_Rpb2_6 |
PF00562 |
1e-117 |
5 |
ENSSSCP00025002128 |
RNA_pol_Rpb2_1 |
PF04563 |
2e-33 |
1 |
ENSSSCP00025002128 |
RNA_pol_Rpa2_4 |
PF06883 |
6.4e-20 |
2 |
ENSSSCP00025002128 |
RNA_pol_Rpb2_3 |
PF04565 |
2.8e-28 |
3 |
ENSSSCP00025002128 |
RNA_pol_Rpb2_7 |
PF04560 |
7.9e-22 |
4 |
ENSSSCP00025002128 |
RNA_pol_Rpb2_2 |
PF04561 |
3.6e-12 |
5 |
ENSSSCP00025002128 |
RNA_pol_Rpb2_6 |
PF00562 |
1.4e-117 |
6 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
POLR1B-201 |
ENSSSCT00025005478 |
5471 |
1077aa |
ENSSSCP00025002128 |
POLR1B-202 |
ENSSSCT00025005480 |
5096 |
952aa |
ENSSSCP00025002129 |
POLR1B-203 |
ENSSSCT00025005491 |
5160 |
1135aa |
ENSSSCP00025002136 |
POLR1B-204 |
ENSSSCT00025005505 |
3837 |
1078aa |
ENSSSCP00025002144 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025005100 | 40.7674 | 26.9384 | sus_scrofa_largewhite | ENSSSCP00025002136 | 44.9339 | 29.6916 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025012256 | 45.1015 | 29.5675 | sus_scrofa_largewhite | ENSSSCP00025002136 | 45.022 | 29.5154 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 100 | 100 | sus_scrofa_pietrain | ENSSSCP00055008898 | 100 | 100 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 100 | 100 | sus_scrofa | ENSSSCP00000040694 | 100 | 100 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 99.9119 | 99.8238 | sus_scrofa_bamei | ENSSSCP00050046203 | 99.9119 | 99.8238 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 97.7974 | 94.4493 | equus_caballus | ENSECAP00000085533 | 94.3878 | 91.1565 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 99.8238 | 99.8238 | sus_scrofa_wuzhishan | ENSSSCP00005021620 | 96.3435 | 96.3435 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 94.8899 | 94.8018 | sus_scrofa_tibetan | ENSSSCP00015034405 | 91.9727 | 91.8873 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 99.9119 | 99.8238 | sus_scrofa_rongchang | ENSSSCP00030040402 | 99.9119 | 99.8238 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 100 | 100 | sus_scrofa_berkshire | ENSSSCP00065037756 | 100 | 100 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 100 | 99.9119 | sus_scrofa_meishan | ENSSSCP00040033954 | 100 | 99.9119 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 100 | 100 | sus_scrofa_usmarc | ENSSSCP00070037160 | 92.4267 | 92.4267 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 100 | 100 | sus_scrofa_jinhua | ENSSSCP00060034668 | 100 | 100 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 100 | 100 | sus_scrofa_hampshire | ENSSSCP00035012096 | 100 | 100 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 98.1498 | 95.4185 | ovis_aries_rambouillet | ENSOARP00020002273 | 95.6223 | 92.9614 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 98.1498 | 95.0661 | bos_taurus | ENSBTAP00000018830 | 98.1498 | 95.0661 |
ENSSSCG00025004108 | sus_scrofa_largewhite | ENSSSCP00025002136 | 100 | 100 | sus_scrofa_landrace | ENSSSCP00045023823 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |