Description

Ensembl ID ENSSSCG00025004108 Gene ID Accession -
Symbol POLR1B Alias - Full Name NA
Status Confidence Length 27037 bases Strand Plus strand
Position LUXX01011191.1 : 927757 - 954793 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00025002144 RNA_pol_Rpb2_1 PF04563 1.7e-36 1
ENSSSCP00025002144 RNA_pol_Rpb2_3 PF04565 2.8e-28 2
ENSSSCP00025002144 RNA_pol_Rpb2_7 PF04560 7.7e-22 3
ENSSSCP00025002144 RNA_pol_Rpb2_2 PF04561 3.5e-12 4
ENSSSCP00025002144 RNA_pol_Rpb2_6 PF00562 1.4e-117 5
ENSSSCP00025002136 RNA_pol_Rpb2_1 PF04563 1.9e-36 1
ENSSSCP00025002136 RNA_pol_Rpa2_4 PF06883 6.7e-20 2
ENSSSCP00025002136 RNA_pol_Rpb2_3 PF04565 3e-28 3
ENSSSCP00025002136 RNA_pol_Rpb2_7 PF04560 8.4e-22 4
ENSSSCP00025002136 RNA_pol_Rpb2_2 PF04561 3.8e-12 5
ENSSSCP00025002136 RNA_pol_Rpb2_6 PF00562 1.6e-117 6
ENSSSCP00025002129 RNA_pol_Rpb2_1 PF04563 1.7e-33 1
ENSSSCP00025002129 RNA_pol_Rpa2_4 PF06883 3.6e-11 2
ENSSSCP00025002129 RNA_pol_Rpb2_7 PF04560 6.6e-22 3
ENSSSCP00025002129 RNA_pol_Rpb2_2 PF04561 2.9e-12 4
ENSSSCP00025002129 RNA_pol_Rpb2_6 PF00562 1e-117 5
ENSSSCP00025002128 RNA_pol_Rpb2_1 PF04563 2e-33 1
ENSSSCP00025002128 RNA_pol_Rpa2_4 PF06883 6.4e-20 2
ENSSSCP00025002128 RNA_pol_Rpb2_3 PF04565 2.8e-28 3
ENSSSCP00025002128 RNA_pol_Rpb2_7 PF04560 7.9e-22 4
ENSSSCP00025002128 RNA_pol_Rpb2_2 PF04561 3.6e-12 5
ENSSSCP00025002128 RNA_pol_Rpb2_6 PF00562 1.4e-117 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
POLR1B-201 ENSSSCT00025005478 5471 1077aa ENSSSCP00025002128
POLR1B-202 ENSSSCT00025005480 5096 952aa ENSSSCP00025002129
POLR1B-203 ENSSSCT00025005491 5160 1135aa ENSSSCP00025002136
POLR1B-204 ENSSSCT00025005505 3837 1078aa ENSSSCP00025002144

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002500510040.767426.9384sus_scrofa_largewhiteENSSSCP0002500213644.933929.6916
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002501225645.101529.5675sus_scrofa_largewhiteENSSSCP0002500213645.02229.5154

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP00025002136100100sus_scrofa_pietrainENSSSCP00055008898100100
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP00025002136100100sus_scrofaENSSSCP00000040694100100
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002500213699.911999.8238sus_scrofa_bameiENSSSCP0005004620399.911999.8238
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002500213697.797494.4493equus_caballusENSECAP0000008553394.387891.1565
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002500213699.823899.8238sus_scrofa_wuzhishanENSSSCP0000502162096.343596.3435
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002500213694.889994.8018sus_scrofa_tibetanENSSSCP0001503440591.972791.8873
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002500213699.911999.8238sus_scrofa_rongchangENSSSCP0003004040299.911999.8238
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP00025002136100100sus_scrofa_berkshireENSSSCP00065037756100100
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002500213610099.9119sus_scrofa_meishanENSSSCP0004003395410099.9119
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP00025002136100100sus_scrofa_usmarcENSSSCP0007003716092.426792.4267
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP00025002136100100sus_scrofa_jinhuaENSSSCP00060034668100100
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP00025002136100100sus_scrofa_hampshireENSSSCP00035012096100100
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002500213698.149895.4185ovis_aries_rambouilletENSOARP0002000227395.622392.9614
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP0002500213698.149895.0661bos_taurusENSBTAP0000001883098.149895.0661
ENSSSCG00025004108sus_scrofa_largewhiteENSSSCP00025002136100100sus_scrofa_landraceENSSSCP00045023823100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression