RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025001696	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	94624 bases	Strand	Plus strand
Position	LUXX01000327.1 : 146864 - 241487	RNA binding domain	WKF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025000687	WKF	PF10180	1.8e-21	1
ENSSSCP00025000695	WKF	PF10180	1.8e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00025002119	1052	180aa	ENSSSCP00025000687
-	ENSSSCT00025002131	1375	182aa	ENSSSCP00025000695

Gene Model

Click here to download ENSSSCG00025001696's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025001696's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025001696

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	74.1758	73.0769	sus_scrofa_pietrain	ENSSSCP00055011949	54.6559	53.8462
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	85.7143	82.4176	sus_scrofa	ENSSSCP00000072568	83.4225	80.2139
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	78.5714	72.5275	sus_scrofa_bamei	ENSSSCP00050009756	41.5698	38.3721
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	74.1758	62.0879	equus_caballus	ENSECAP00000059202	39.3586	32.9446
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	73.6264	72.5275	sus_scrofa_tibetan	ENSSSCP00015039945	54.251	53.4413
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	79.6703	73.0769	sus_scrofa_rongchang	ENSSSCP00030039785	42.1512	38.6628
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	86.2637	82.4176	sus_scrofa_berkshire	ENSSSCP00065030157	83.9572	80.2139
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	79.6703	73.6264	sus_scrofa_meishan	ENSSSCP00040005111	41.6667	38.5057
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	99.4505	99.4505	sus_scrofa_usmarc	ENSSSCP00070015378	99.4505	99.4505
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	86.2637	82.4176	sus_scrofa_jinhua	ENSSSCP00060011941	83.9572	80.2139
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	85.7143	82.4176	sus_scrofa_hampshire	ENSSSCP00035020825	83.4225	80.2139
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	80.2198	74.1758	bos_taurus	ENSBTAP00000071018	71.2195	65.8537
ENSSSCG00025001696	sus_scrofa_largewhite	ENSSSCP00025000695	86.2637	82.4176	sus_scrofa_landrace	ENSSSCP00045010191	83.9572	80.2139

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression