RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025001260	Gene ID		Accession	-
Symbol	P3H2	Alias	-	Full Name	NA
Status	Confidence	Length	157110 bases	Strand	Minus strand
Position	LUXX01006048.1 : 711365 - 868474	RNA binding domain	2OG-FeII_Oxy
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025000525	2OG-FeII_Oxy	PF03171	3.6e-09	1
ENSSSCP00025000503	2OG-FeII_Oxy	PF03171	7.2e-09	1
ENSSSCP00025000499	2OG-FeII_Oxy	PF03171	7.9e-09	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
P3H2-201	ENSSSCT00025001591	3556	706aa	ENSSSCP00025000499
P3H2-202	ENSSSCT00025001606	3460	674aa	ENSSSCP00025000503
P3H2-203	ENSSSCT00025001679	2706	506aa	ENSSSCP00025000525

Gene Model

Click here to download ENSSSCG00025001260's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025001260's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025017971	56.121	39.7524	sus_scrofa_largewhite	ENSSSCP00025000499	57.7904	40.9348
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025006871	61.6848	46.4674	sus_scrofa_largewhite	ENSSSCP00025000499	64.3059	48.4419

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	99.8584	99.8584	sus_scrofa_pietrain	ENSSSCP00055012489	99.8584	99.8584
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	100	100	sus_scrofa	ENSSSCP00000012584	100	100
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	99.8584	99.7167	sus_scrofa_bamei	ENSSSCP00050035636	99.8584	99.7167
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	96.8839	95.1841	equus_caballus	ENSECAP00000082560	94.3448	92.6897
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	85.2691	85.1275	sus_scrofa_wuzhishan	ENSSSCP00005041796	85.8773	85.7347
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	99.1501	99.0085	sus_scrofa_tibetan	ENSSSCP00015014263	99.4318	99.2898
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	100	99.8584	sus_scrofa_rongchang	ENSSSCP00030021307	100	99.8584
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	100	100	sus_scrofa_berkshire	ENSSSCP00065023433	98.6034	98.6034
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	100	99.8584	sus_scrofa_meishan	ENSSSCP00040027921	100	99.8584
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	100	100	sus_scrofa_usmarc	ENSSSCP00070025838	100	100
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	100	99.8584	sus_scrofa_jinhua	ENSSSCP00060019842	100	99.8584
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	100	99.8584	sus_scrofa_hampshire	ENSSSCP00035043024	100	99.8584
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	95.1841	93.6261	ovis_aries_rambouillet	ENSOARP00020031279	96.9697	95.3824
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	97.1671	95.8923	bos_taurus	ENSBTAP00000027999	97.1671	95.8923
ENSSSCG00025001260	sus_scrofa_largewhite	ENSSSCP00025000499	100	100	sus_scrofa_landrace	ENSSSCP00045032668	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression