RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025001101	Gene ID		Accession	-
Symbol	DCAF13	Alias	-	Full Name	NA
Status	Confidence	Length	38311 bases	Strand	Plus strand
Position	LUXX01004567.1 : 148820 - 187130	RNA binding domain	eIF2A , Sof1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025000404	eIF2A	PF08662	5.4e-07	1
ENSSSCP00025000404	Sof1	PF04158	1e-32	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
DCAF13-201	ENSSSCT00025001336	789	221aa	ENSSSCP00025000378
DCAF13-202	ENSSSCT00025001347	681	185aa	ENSSSCP00025000386
DCAF13-203	ENSSSCT00025001362	3914	216aa	ENSSSCP00025000394
DCAF13-204	ENSSSCT00025001379	1998	445aa	ENSSSCP00025000404

Gene Model

Click here to download ENSSSCG00025001101's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025001101's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025001101

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	99.7753	sus_scrofa_pietrain	ENSSSCP00055033686	100	99.7753
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	99.7753	99.7753	sus_scrofa	ENSSSCP00000006459	100	100
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	100	sus_scrofa_bamei	ENSSSCP00050011112	100	100
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	80.6742	74.6067	equus_caballus	ENSECAP00000075953	75.7384	70.0422
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	98.8764	98.8764	sus_scrofa_wuzhishan	ENSSSCP00005027342	99.5475	99.5475
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	99.7753	sus_scrofa_tibetan	ENSSSCP00015000032	100	99.7753
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	100	sus_scrofa_rongchang	ENSSSCP00030000274	100	100
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	99.7753	sus_scrofa_berkshire	ENSSSCP00065034143	100	99.7753
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	100	sus_scrofa_meishan	ENSSSCP00040010814	100	100
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	100	sus_scrofa_usmarc	ENSSSCP00070016896	100	100
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	100	sus_scrofa_jinhua	ENSSSCP00060024033	100	100
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	99.7753	sus_scrofa_hampshire	ENSSSCP00035008880	100	99.7753
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	98.8764	95.9551	ovis_aries_rambouillet	ENSOARP00020025947	98.8764	95.9551
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	99.3258	95.7303	bos_taurus	ENSBTAP00000028594	99.3258	95.7303
ENSSSCG00025001101	sus_scrofa_largewhite	ENSSSCP00025000404	100	99.7753	sus_scrofa_landrace	ENSSSCP00045040080	100	99.7753

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression