RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00025000720	Gene ID		Accession	-
Symbol	CPSF2	Alias	-	Full Name	NA
Status	Confidence	Length	33802 bases	Strand	Minus strand
Position	LUXX01011673.1 : 2130915 - 2164716	RNA binding domain	Lactamase_B , Beta-Casp , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00025000236	Lactamase_B	PF00753	6.5e-06	1
ENSSSCP00025000236	Beta-Casp	PF10996	1.8e-19	2
ENSSSCP00025000236	RMMBL	PF07521	5.6e-17	3
ENSSSCP00025000253	Lactamase_B	PF00753	7.6e-06	1
ENSSSCP00025000253	Beta-Casp	PF10996	1.8e-19	2
ENSSSCP00025000253	RMMBL	PF07521	5.4e-17	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
CPSF2-201	ENSSSCT00025000916	6002	782aa	ENSSSCP00025000236
CPSF2-202	ENSSSCT00025000950	5963	769aa	ENSSSCP00025000253

Gene Model

Click here to download ENSSSCG00025000720's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00025000720's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025041479	39.6313	22.1198	sus_scrofa_largewhite	ENSSSCP00025000236	32.9923	18.4143
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025012746	40.4762	20.3869	sus_scrofa_largewhite	ENSSSCP00025000236	34.7826	17.5192
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025023043	33.9478	17.0507	sus_scrofa_largewhite	ENSSSCP00025000236	28.2609	14.1944

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_pietrain	ENSSSCP00055004288	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa	ENSSSCP00000042294	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_bamei	ENSSSCP00050035932	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	99.4885	equus_caballus	ENSECAP00000021492	96.7822	96.2871
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_wuzhishan	ENSSSCP00005036296	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_tibetan	ENSSSCP00015007173	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_rongchang	ENSSSCP00030047533	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_berkshire	ENSSSCP00065043520	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_meishan	ENSSSCP00040022178	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_usmarc	ENSSSCP00070003725	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_jinhua	ENSSSCP00060027359	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_hampshire	ENSSSCP00035019918	100	100
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	99.7442	99.3606	ovis_aries_rambouillet	ENSOARP00020020032	99.872	99.4878
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	99.8721	99.4885	bos_taurus	ENSBTAP00000013500	99.8721	99.4885
ENSSSCG00025000720	sus_scrofa_largewhite	ENSSSCP00025000236	100	100	sus_scrofa_landrace	ENSSSCP00045042674	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression