RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015073511	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	71106 bases	Strand	Plus strand
Position	AORO02057072.1 : 1639 - 72744	RNA binding domain	Exo_endo_phos , DUF1866
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015040922	Exo_endo_phos	PF03372	1.3e-12	1
ENSSSCP00015040922	DUF1866	PF08952	6.4e-57	2
ENSSSCP00015040783	DUF1866	PF08952	3.5e-57	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00015098831	4584	819aa	ENSSSCP00015040783
-	ENSSSCT00015099064	6584	1238aa	ENSSSCP00015040922

Gene Model

Click here to download ENSSSCG00015073511's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015073511's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015042937	27.2204	15.7072	sus_scrofa_tibetan	ENSSSCP00015040922	26.7367	15.4281
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015041730	8.59375	3.125	sus_scrofa_tibetan	ENSSSCP00015040922	0.88853	0.323102
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015043562	13.5338	6.76692	sus_scrofa_tibetan	ENSSSCP00015040922	1.45396	0.726979
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015022032	27.9146	15.5993	sus_scrofa_tibetan	ENSSSCP00015040922	13.7318	7.67367
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015004451	23.8462	12.7473	sus_scrofa_tibetan	ENSSSCP00015040922	17.5283	9.36995
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015007228	25.9226	14.1314	sus_scrofa_tibetan	ENSSSCP00015040922	23.2633	12.6817
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015020418	43.3702	25.9669	sus_scrofa_tibetan	ENSSSCP00015040922	12.6817	7.59289
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015029752	48.1747	35.7236	sus_scrofa_tibetan	ENSSSCP00015040922	59.6931	44.2649
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015030555	33.7349	19.0581	sus_scrofa_tibetan	ENSSSCP00015040922	24.8788	14.0549
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015047200	25.5159	16.4165	sus_scrofa_tibetan	ENSSSCP00015040922	21.9709	14.1357

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	91.7609	87.6414	equus_caballus	ENSECAP00000038258	71.5365	68.3249
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	89.2569	88.853	sus_scrofa	ENSSSCP00000020455	78.816	78.4593
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	99.273	99.273	sus_scrofa_meishan	ENSSSCP00040018543	83.5486	83.5486
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	99.8384	99.7577	sus_scrofa_berkshire	ENSSSCP00065034910	83.6265	83.5589
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	99.8384	99.7577	sus_scrofa_pietrain	ENSSSCP00055030758	83.6265	83.5589
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	92.2456	88.5299	bos_taurus	ENSBTAP00000038897	76.7989	73.7054
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	99.5961	99.5961	sus_scrofa_jinhua	ENSSSCP00060022488	83.4235	83.4235
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	99.5961	99.5154	sus_scrofa_bamei	ENSSSCP00050010684	83.4235	83.3559
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	79.0792	75.1212	ovis_aries_rambouillet	ENSOARP00020005473	76.5442	72.7131
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	99.1922	99.1115	sus_scrofa_largewhite	ENSSSCP00025039300	83.4806	83.4126
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	99.1922	99.1115	sus_scrofa_hampshire	ENSSSCP00035034844	83.4806	83.4126
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	99.3538	99.0307	sus_scrofa_usmarc	ENSSSCP00070045324	84.0164	83.7432
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	21.4863	21.0824	sus_scrofa_wuzhishan	ENSSSCP00005011162	92.6829	90.9408
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	65.9935	65.9935	sus_scrofa_wuzhishan	ENSSSCP00005011320	99.7558	99.7558
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	91.0339	89.9838	sus_scrofa_rongchang	ENSSSCP00030036284	78.5914	77.6848
ENSSSCG00015073511	sus_scrofa_tibetan	ENSSSCP00015040922	99.9192	99.9192	sus_scrofa_landrace	ENSSSCP00045039548	83.6942	83.6942

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression