RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015072094	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1051 bases	Strand	Plus strand
Position	AORO02051105.1 : 1111015 - 1112065	RNA binding domain	Ribosomal_L19e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015039866	Ribosomal_L19e	PF01280	9.2e-33	1
ENSSSCP00015039866	Ribosomal_L19e	PF01280	9.2e-33	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00015096980	579	192aa	ENSSSCP00015039866

Gene Model

Click here to download ENSSSCG00015072094's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015072094's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015030530	73.9796	68.3673	sus_scrofa_tibetan	ENSSSCP00015039866	75.5208	69.7917
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015010850	66.4516	56.129	sus_scrofa_tibetan	ENSSSCP00015039866	53.6458	45.3125
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015039047	74.2268	68.5567	sus_scrofa_tibetan	ENSSSCP00015039866	75	69.2708

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015039866	75	69.2708	equus_caballus	ENSECAP00000082924	53.5316	49.4424
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015039866	100	99.4792	sus_scrofa	ENSSSCP00000016335	100	99.4792
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015039866	75.5208	69.7917	bos_taurus	ENSBTAP00000002666	73.9796	68.3673
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015039866	100	99.4792	sus_scrofa_jinhua	ENSSSCP00060036667	100	99.4792
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015039866	75.5208	69.7917	ovis_aries_rambouillet	ENSOARP00020020707	73.9796	68.3673
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015039866	99.4792	98.9583	sus_scrofa_largewhite	ENSSSCP00025015631	99.4792	98.9583
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015039866	100	99.4792	sus_scrofa_wuzhishan	ENSSSCP00005043663	100	99.4792
ENSSSCG00015072094	sus_scrofa_tibetan	ENSSSCP00015039866	100	99.4792	sus_scrofa_rongchang	ENSSSCP00030019957	100	99.4792

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression