Description

Ensembl ID ENSSSCG00015068969 Gene ID Accession -
Symbol FXR1 Alias - Full Name NA
Status Confidence Length 60279 bases Strand Minus strand
Position AORO02056691.1 : 56576 - 116854 RNA binding domain Agenet , FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSSSCP00015040056 Agenet PF05641 1e-14 1
ENSSSCP00015040056 Agenet PF05641 1e-14 2
ENSSSCP00015040056 FXR_C1 PF16096 1.1e-38 3
ENSSSCP00015040056 KH_1 PF00013 7.5e-17 4
ENSSSCP00015040056 KH_1 PF00013 7.5e-17 5
ENSSSCP00015040056 KH_9 PF17904 1.4e-36 6
ENSSSCP00015040056 FXMRP1_C_core PF12235 7.3e-34 7
ENSSSCP00015040056 FXMRP1_C_core PF12235 7.3e-34 8
ENSSSCP00015038838 Agenet PF05641 1e-14 1
ENSSSCP00015038838 Agenet PF05641 1e-14 2
ENSSSCP00015038838 FXR_C1 PF16096 5.1e-39 3
ENSSSCP00015038838 KH_1 PF00013 7.1e-17 4
ENSSSCP00015038838 KH_1 PF00013 7.1e-17 5
ENSSSCP00015038838 KH_9 PF17904 1.4e-36 6
ENSSSCP00015038838 FXMRP1_C_core PF12235 1.9e-54 7
ENSSSCP00015039574 Agenet PF05641 1.2e-14 1
ENSSSCP00015039574 Agenet PF05641 1.2e-14 2
ENSSSCP00015039574 FXR_C1 PF16096 4.7e-39 3
ENSSSCP00015039574 KH_1 PF00013 6.8e-17 4
ENSSSCP00015039574 KH_1 PF00013 6.8e-17 5
ENSSSCP00015039574 KH_9 PF17904 3.8e-16 6
ENSSSCP00015039574 FXMRP1_C_core PF12235 9.3e-33 7
ENSSSCP00015039574 FXMRP1_C_core PF12235 9.3e-33 8
ENSSSCP00015040026 Agenet PF05641 1.2e-14 1
ENSSSCP00015040026 Agenet PF05641 1.2e-14 2
ENSSSCP00015040026 FXR_C1 PF16096 1.2e-38 3
ENSSSCP00015040026 KH_1 PF00013 8.5e-17 4
ENSSSCP00015040026 KH_1 PF00013 8.5e-17 5
ENSSSCP00015040026 KH_9 PF17904 1.5e-36 6
ENSSSCP00015040026 FXMRP1_C_core PF12235 2.1e-54 7
ENSSSCP00015039423 Agenet PF05641 1.7e-14 1
ENSSSCP00015039423 FXR_C1 PF16096 1.4e-38 2
ENSSSCP00015039423 KH_1 PF00013 1e-16 3
ENSSSCP00015039423 KH_1 PF00013 1e-16 4
ENSSSCP00015039423 KH_9 PF17904 1.6e-36 5
ENSSSCP00015039423 FXMRP1_C_core PF12235 2.2e-54 6
ENSSSCP00015040190 Agenet PF05641 2.6e-08 1
ENSSSCP00015040190 FXR_C1 PF16096 1.1e-38 2
ENSSSCP00015040190 KH_1 PF00013 7.7e-17 3
ENSSSCP00015040190 KH_1 PF00013 7.7e-17 4
ENSSSCP00015040190 KH_9 PF17904 1.4e-36 5
ENSSSCP00015040190 FXMRP1_C_core PF12235 1.9e-54 6
ENSSSCP00015039318 Agenet PF05641 3e-08 1
ENSSSCP00015039318 FXR_C1 PF16096 1.3e-38 2
ENSSSCP00015039318 KH_1 PF00013 9.3e-17 3
ENSSSCP00015039318 KH_1 PF00013 9.3e-17 4
ENSSSCP00015039318 KH_9 PF17904 1.5e-36 5
ENSSSCP00015039318 FXMRP1_C_core PF12235 2.2e-54 6
ENSSSCP00015039085 Agenet PF05641 7.1e-06 1
ENSSSCP00015039085 FXR_C1 PF16096 4.1e-39 2
ENSSSCP00015039085 KH_1 PF00013 4.9e-17 3
ENSSSCP00015039085 KH_1 PF00013 4.9e-17 4
ENSSSCP00015039085 KH_9 PF17904 1.1e-36 5
ENSSSCP00015039085 FXMRP1_C_core PF12235 4.8e-34 6
ENSSSCP00015039085 FXMRP1_C_core PF12235 4.8e-34 7
ENSSSCP00015040389 Agenet PF05641 8.9e-06 1
ENSSSCP00015040389 FXR_C1 PF16096 4.3e-39 2
ENSSSCP00015040389 KH_1 PF00013 5.4e-17 3
ENSSSCP00015040389 KH_1 PF00013 5.4e-17 4
ENSSSCP00015040389 KH_9 PF17904 1.1e-36 5
ENSSSCP00015040389 FXMRP1_C_core PF12235 6.2e-34 6
ENSSSCP00015040389 FXMRP1_C_core PF12235 6.2e-34 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
FXR1-203 ENSSSCT00015094702 3124 568aa ENSSSCP00015038838
FXR1-202 ENSSSCT00015095200 2866 490aa ENSSSCP00015039085
FXR1-201 ENSSSCT00015095739 3180 646aa ENSSSCP00015039318
FXR1-204 ENSSSCT00015095965 3011 677aa ENSSSCP00015039423
FXR1-208 ENSSSCT00015096297 2672 582aa ENSSSCP00015039574
FXR1-206 ENSSSCT00015097368 6602 604aa ENSSSCP00015040026
FXR1-207 ENSSSCT00015097453 6515 575aa ENSSSCP00015040056
FXR1-205 ENSSSCT00015097777 6498 573aa ENSSSCP00015040190
FXR1-209 ENSSSCT00015098198 3093 504aa ENSSSCP00015040389

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP0001501987876.989665.0519sus_scrofa_tibetanENSSSCP0001503942365.731255.5391
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP0001501748069.394459.2471sus_scrofa_tibetanENSSSCP0001503942362.629253.4712

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP0001503942399.556999.4092equus_caballusENSECAP0000002353996.561696.4183
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofaENSSSCP00000023407100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_meishanENSSSCP00040017268100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_berkshireENSSSCP00065040113100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_pietrainENSSSCP00055003371100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP0001503942395.42195.2733bos_taurusENSBTAP0000006881799.691499.537
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_jinhuaENSSSCP00060012232100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_bameiENSSSCP00050013264100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP0001503942390.251188.9217ovis_aries_rambouilletENSOARP000200077359492.6154
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_largewhiteENSSSCP00025034378100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_hampshireENSSSCP00035026896100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_usmarcENSSSCP00070035232100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_wuzhishanENSSSCP00005006524100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_rongchangENSSSCP00030002313100100
ENSSSCG00015068969sus_scrofa_tibetanENSSSCP00015039423100100sus_scrofa_landraceENSSSCP00045016997100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression