RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015065377	Gene ID		Accession	-
Symbol	POLR2F	Alias	-	Full Name	NA
Status	Confidence	Length	62350 bases	Strand	Minus strand
Position	AORO02048313.1 : 451961 - 514310	RNA binding domain	RNA_pol_Rpb6
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015035674	RNA_pol_Rpb6	PF01192	9.6e-13	1
ENSSSCP00015035644	RNA_pol_Rpb6	PF01192	1.5e-12	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
POLR2F-201	ENSSSCT00015087486	4035	137aa	ENSSSCP00015035644
POLR2F-202	ENSSSCT00015087552	597	127aa	ENSSSCP00015035674

Gene Model

Click here to download ENSSSCG00015065377's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015065377's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015065377

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	60.5839	56.9343	equus_caballus	ENSECAP00000059489	53.2051	50
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526	sus_scrofa	ENSSSCP00000000120	82.6772	80.315
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526	sus_scrofa_meishan	ENSSSCP00040043382	82.6772	80.315
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526	sus_scrofa_berkshire	ENSSSCP00065017212	82.6772	80.315
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	100	100	sus_scrofa_pietrain	ENSSSCP00055025852	100	100
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	73.7226	bos_taurus	ENSBTAP00000006328	82.6772	79.5276
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526	sus_scrofa_jinhua	ENSSSCP00060019654	82.6772	80.315
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526	sus_scrofa_bamei	ENSSSCP00050038608	82.6772	80.315
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	73.7226	ovis_aries_rambouillet	ENSOARP00020010358	82.6772	79.5276
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526	sus_scrofa_largewhite	ENSSSCP00025017035	82.6772	80.315
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526	sus_scrofa_hampshire	ENSSSCP00035004138	82.6772	80.315
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526	sus_scrofa_usmarc	ENSSSCP00070041718	82.6772	80.315
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	100	100	sus_scrofa_wuzhishan	ENSSSCP00005000955	100	100
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	76.6423	74.4526	sus_scrofa_rongchang	ENSSSCP00030001959	82.6772	80.315
ENSSSCG00015065377	sus_scrofa_tibetan	ENSSSCP00015035644	100	100	sus_scrofa_landrace	ENSSSCP00045000578	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression