RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00015062830	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	79096 bases	Strand	Plus strand
Position	AORO02063995.1 : 819349 - 898444	RNA binding domain	SEN1_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015034039	SEN1_N	PF12726	5.8e-13	1
ENSSSCP00015034132	SEN1_N	PF12726	5.9e-13	1
ENSSSCP00015034086	SEN1_N	PF12726	5.9e-13	1
ENSSSCP00015034252	SEN1_N	PF12726	6e-13	1
ENSSSCP00015034181	SEN1_N	PF12726	6.1e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00015084011	8337	2575aa	ENSSSCP00015034039
-	ENSSSCT00015084116	8368	2611aa	ENSSSCP00015034086
-	ENSSSCT00015084212	8353	2606aa	ENSSSCP00015034132
-	ENSSSCT00015084305	8400	2676aa	ENSSSCP00015034181
-	ENSSSCT00015084422	8553	2661aa	ENSSSCP00015034252

Gene Model

Click here to download ENSSSCG00015062830's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015062830's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015003116	33.8399	19.6555	sus_scrofa_tibetan	ENSSSCP00015034181	12.4813	7.24963
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015001261	25.9605	13.188	sus_scrofa_tibetan	ENSSSCP00015034181	18.6846	9.49178
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034147	34.7673	18.8762	sus_scrofa_tibetan	ENSSSCP00015034181	14.7982	8.03438
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015016886	22.5065	11.5405	sus_scrofa_tibetan	ENSSSCP00015034181	16.1061	8.25859
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015010656	36.1345	21.8487	sus_scrofa_tibetan	ENSSSCP00015034181	1.60688	0.971599
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015000552	35.6752	18.7956	sus_scrofa_tibetan	ENSSSCP00015034181	14.6114	7.69806
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015042916	30.8981	14.8794	sus_scrofa_tibetan	ENSSSCP00015034181	17.2272	8.29596
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015036956	34.072	18.4672	sus_scrofa_tibetan	ENSSSCP00015034181	13.7892	7.47384
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015000631	25.4997	12.7843	sus_scrofa_tibetan	ENSSSCP00015034181	27.6532	13.864

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	87.7055	80.4185	equus_caballus	ENSECAP00000085978	86.3503	79.1759
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.29	99.2526	sus_scrofa	ENSSSCP00000058630	99.8497	99.8121
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.8879	99.8879	sus_scrofa_meishan	ENSSSCP00040034702	99.8879	99.8879
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.8505	99.8132	sus_scrofa_berkshire	ENSSSCP00065035672	99.8505	99.8132
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.8505	99.8132	sus_scrofa_pietrain	ENSSSCP00055009847	99.8505	99.8132
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	85.6876	78.2138	bos_taurus	ENSBTAP00000073280	85.464	78.0097
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	29.0732	28.9238	sus_scrofa_jinhua	ENSSSCP00060017650	94.8781	94.3902
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	68.0493	67.4514	sus_scrofa_jinhua	ENSSSCP00060028395	98.2731	97.4096
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.9253	99.8879	sus_scrofa_bamei	ENSSSCP00050026911	99.9253	99.8879
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.7758	99.701	sus_scrofa_largewhite	ENSSSCP00025029657	99.7758	99.701
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.8879	99.8505	sus_scrofa_hampshire	ENSSSCP00035014074	99.8879	99.8505
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.8505	99.8132	sus_scrofa_usmarc	ENSSSCP00070010853	99.8505	99.8132
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	94.6936	94.6188	sus_scrofa_wuzhishan	ENSSSCP00005005096	99.7245	99.6458
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.9253	99.8879	sus_scrofa_rongchang	ENSSSCP00030028855	99.9253	99.8879
ENSSSCG00015062830	sus_scrofa_tibetan	ENSSSCP00015034181	99.8132	99.7758	sus_scrofa_landrace	ENSSSCP00045031741	99.8132	99.7758

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression