RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015055112	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	105919 bases	Strand	Plus strand
Position	AORO02061495.1 : 1100370 - 1206288	RNA binding domain	Exo_endo_phos , DUF1866
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015029695	Exo_endo_phos	PF03372	1.2e-12	1
ENSSSCP00015029695	DUF1866	PF08952	1e-57	2
ENSSSCP00015029969	Exo_endo_phos	PF03372	1.2e-12	1
ENSSSCP00015029969	DUF1866	PF08952	1e-57	2
ENSSSCP00015029917	Exo_endo_phos	PF03372	1.3e-12	1
ENSSSCP00015029917	DUF1866	PF08952	1e-57	2
ENSSSCP00015029795	Exo_endo_phos	PF03372	1.3e-12	1
ENSSSCP00015029795	DUF1866	PF08952	1.1e-57	2
ENSSSCP00015029849	Exo_endo_phos	PF03372	1.3e-12	1
ENSSSCP00015029849	DUF1866	PF08952	1.1e-57	2
ENSSSCP00015029752	Exo_endo_phos	PF03372	1.6e-12	1
ENSSSCP00015029752	DUF1866	PF08952	1.2e-57	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00015073982	7125	1285aa	ENSSSCP00015029695
-	ENSSSCT00015074103	7077	1534aa	ENSSSCP00015029752
-	ENSSSCT00015074220	7216	1319aa	ENSSSCP00015029795
-	ENSSSCT00015074397	7862	1325aa	ENSSSCP00015029849
-	ENSSSCT00015074581	4097	1308aa	ENSSSCP00015029917
-	ENSSSCT00015074719	7174	1303aa	ENSSSCP00015029969

Gene Model

Click here to download ENSSSCG00015055112's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015055112's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015042937	29.1118	16.5296	sus_scrofa_tibetan	ENSSSCP00015029752	23.0769	13.103
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015041730	29.6875	16.4062	sus_scrofa_tibetan	ENSSSCP00015029752	2.47718	1.36897
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015043562	33.8346	20.3008	sus_scrofa_tibetan	ENSSSCP00015029752	2.93351	1.7601
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015040922	59.6931	44.2649	sus_scrofa_tibetan	ENSSSCP00015029752	48.1747	35.7236
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015022032	45.4844	25.9442	sus_scrofa_tibetan	ENSSSCP00015029752	18.0574	10.2999
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015004451	36.2637	20.4396	sus_scrofa_tibetan	ENSSSCP00015029752	21.5124	12.1252
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015007228	36.8137	20.072	sus_scrofa_tibetan	ENSSSCP00015029752	26.6623	14.5372
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015020418	41.9889	27.0718	sus_scrofa_tibetan	ENSSSCP00015029752	9.90874	6.38853
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015030555	34.6112	21.2486	sus_scrofa_tibetan	ENSSSCP00015029752	20.5997	12.6467
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015047200	28.7992	16.9794	sus_scrofa_tibetan	ENSSSCP00015029752	20.013	11.7992

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	94.1982	91.5906	equus_caballus	ENSECAP00000039406	90.8805	88.3648
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	99.8044	99.8044	sus_scrofa	ENSSSCP00000051758	98.141	98.141
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	100	99.8696	sus_scrofa_meishan	ENSSSCP00040033225	97.335	97.2081
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	99.9348	99.9348	sus_scrofa_berkshire	ENSSSCP00065041791	97.2716	97.2716
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	99.9348	99.9348	sus_scrofa_pietrain	ENSSSCP00055030485	97.2716	97.2716
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	94.3286	92.3729	bos_taurus	ENSBTAP00000072073	91.6403	89.7403
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	99.9348	99.8696	sus_scrofa_jinhua	ENSSSCP00060019933	97.2716	97.2081
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	99.8696	99.7392	sus_scrofa_bamei	ENSSSCP00050029821	99.8696	99.7392
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	94.3937	92.2425	ovis_aries_rambouillet	ENSOARP00020001111	90.1619	88.1071
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	99.9348	99.9348	sus_scrofa_largewhite	ENSSSCP00025013720	97.2716	97.2716
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	99.9348	99.9348	sus_scrofa_hampshire	ENSSSCP00035017232	99.9348	99.9348
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	83.8331	82.9857	sus_scrofa_usmarc	ENSSSCP00070022696	93.3237	92.3803
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	79.2047	78.8787	sus_scrofa_wuzhishan	ENSSSCP00005025551	93.9675	93.5808
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	100	100	sus_scrofa_rongchang	ENSSSCP00030006363	100	100
ENSSSCG00015055112	sus_scrofa_tibetan	ENSSSCP00015029752	99.9348	99.9348	sus_scrofa_landrace	ENSSSCP00045027169	97.2716	97.2716

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression