RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSSSCG00015043811	Gene ID		Accession	-
Symbol	FGF11	Alias	-	Full Name	NA
Status	Confidence	Length	72588 bases	Strand	Minus strand
Position	AORO02028450.1 : 894961 - 967548	RNA binding domain	RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3 , RNA_pol_Rpb1_R , RNA_pol_Rpb1_6 , RNA_pol_Rpb1_7
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015023563	RNA_pol_Rpb1_4	PF05000	6.8e-38	1
ENSSSCP00015023563	RNA_pol_Rpb1_1	PF04997	1e-108	2
ENSSSCP00015023563	RNA_pol_Rpb1_5	PF04998	2.9e-100	3
ENSSSCP00015023563	RNA_pol_Rpb1_2	PF00623	2.2e-74	4
ENSSSCP00015023563	RNA_pol_Rpb1_3	PF04983	1.6e-49	5
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	6
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	7
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	8
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	9
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	10
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	11
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	12
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	13
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	14
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	15
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	16
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	17
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	18
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	19
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	20
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	21
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	22
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	23
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	24
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	25
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	26
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	27
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	28
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	29
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	30
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	31
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	32
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	33
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	34
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	35
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	36
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	37
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	38
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	39
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	40
ENSSSCP00015023563	RNA_pol_Rpb1_R	PF05001	1.4e-25	41
ENSSSCP00015023563	RNA_pol_Rpb1_6	PF04992	4.4e-68	42
ENSSSCP00015023563	RNA_pol_Rpb1_7	PF04990	3.7e-54	43
ENSSSCP00015023396	RNA_pol_Rpb1_4	PF05000	7e-38	1
ENSSSCP00015023396	RNA_pol_Rpb1_1	PF04997	9.3e-103	2
ENSSSCP00015023396	RNA_pol_Rpb1_5	PF04998	1.2e-100	3
ENSSSCP00015023396	RNA_pol_Rpb1_2	PF00623	2.2e-74	4
ENSSSCP00015023396	RNA_pol_Rpb1_3	PF04983	1.6e-49	5
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	6
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	7
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	8
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	9
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	10
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	11
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	12
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	13
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	14
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	15
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	16
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	17
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	18
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	19
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	20
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	21
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	22
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	23
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	24
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	25
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	26
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	27
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	28
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	29
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	30
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	31
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	32
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	33
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	34
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	35
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	36
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	37
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	38
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	39
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	40
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	41
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	42
ENSSSCP00015023396	RNA_pol_Rpb1_R	PF05001	2.2e-25	43
ENSSSCP00015023396	RNA_pol_Rpb1_6	PF04992	4.2e-68	44
ENSSSCP00015023396	RNA_pol_Rpb1_7	PF04990	3.8e-54	45

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FGF11-202	ENSSSCT00015058362	6444	1976aa	ENSSSCP00015023396
FGF11-201	ENSSSCT00015058727	6740	1942aa	ENSSSCP00015023563
FGF11-203	ENSSSCT00015058888	2080	505aa	ENSSSCP00015023647
FGF11-204	ENSSSCT00015059018	4644	332aa	ENSSSCP00015023731
FGF11-205	ENSSSCT00015059124	2754	563aa	ENSSSCP00015023788
FGF11-206	ENSSSCT00015059239	3066	499aa	ENSSSCP00015023836
FGF11-208	ENSSSCT00015059582	3545	225aa	ENSSSCP00015023958
FGF11-207	ENSSSCT00015059660	2357	101aa	ENSSSCP00015024000

Gene Model

Click here to download ENSSSCG00015043811's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015043811's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015003366	55.235	35.8615	sus_scrofa_tibetan	ENSSSCP00015023396	33.9069	22.0142
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015018454	40.4651	24.8256	sus_scrofa_tibetan	ENSSSCP00015023396	35.2227	21.6093

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	96.7105	96.7105	equus_caballus	ENSECAP00000057709	98.2014	98.2014
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	97.2672	97.2166	sus_scrofa	ENSSSCP00000024326	97.6626	97.6118
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	97.3684	97.3178	sus_scrofa_meishan	ENSSSCP00040010721	97.665	97.6142
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	97.166	97.1154	sus_scrofa_berkshire	ENSSSCP00065033026	97.4619	97.4112
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	97.166	97.1154	sus_scrofa_pietrain	ENSSSCP00055021233	97.4619	97.4112
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	97.3684	97.2672	bos_taurus	ENSBTAP00000065848	97.665	97.5635
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	96.5587	96.4575	sus_scrofa_jinhua	ENSSSCP00060027889	97.3966	97.2945
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	96.5587	96.4575	sus_scrofa_bamei	ENSSSCP00050003478	97.3966	97.2945
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	97.3684	97.2672	ovis_aries_rambouillet	ENSOARP00020017833	97.665	97.5635
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	92.5607	91.5486	sus_scrofa_largewhite	ENSSSCP00025040164	91.9095	90.9045
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	96.8117	96.7611	sus_scrofa_hampshire	ENSSSCP00035029604	98.8631	98.8114
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	96.002	95.9008	sus_scrofa_usmarc	ENSSSCP00070036079	97.2821	97.1795
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	90.8401	90.4352	sus_scrofa_wuzhishan	ENSSSCP00005043646	95.6313	95.2051
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	97.166	97.1154	sus_scrofa_rongchang	ENSSSCP00030048869	98.8671	98.8157
ENSSSCG00015043811	sus_scrofa_tibetan	ENSSSCP00015023396	97.166	97.1154	sus_scrofa_landrace	ENSSSCP00045037796	97.4619	97.4112

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression