RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015037133	Gene ID		Accession	-
Symbol	FXR2	Alias	-	Full Name	NA
Status	Confidence	Length	17525 bases	Strand	Plus strand
Position	AORO02028450.1 : 799870 - 817394	RNA binding domain	FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015019878	FXR_C1	PF16096	3.3e-34	1
ENSSSCP00015019878	KH_1	PF00013	2.2e-18	2
ENSSSCP00015019878	KH_1	PF00013	2.2e-18	3
ENSSSCP00015019878	KH_9	PF17904	4.6e-30	4
ENSSSCP00015019878	FXMRP1_C_core	PF12235	9.1e-40	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
FXR2-201	ENSSSCT00015049821	2614	578aa	ENSSSCP00015019878

Gene Model

Click here to download ENSSSCG00015037133's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015037133's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015039423	65.7312	55.5391	sus_scrofa_tibetan	ENSSSCP00015019878	76.9896	65.0519
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015017480	54.1735	43.3715	sus_scrofa_tibetan	ENSSSCP00015019878	57.2664	45.8478

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	99.481	98.7889	equus_caballus	ENSECAP00000070437	88.7346	88.1173
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	100	100	sus_scrofa	ENSSSCP00000019019	86.6567	86.6567
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	96.5398	96.0208	sus_scrofa_meishan	ENSSSCP00040009444	77.933	77.514
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	96.5398	96.0208	sus_scrofa_berkshire	ENSSSCP00065030149	78.042	77.6224
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	96.5398	96.0208	sus_scrofa_pietrain	ENSSSCP00055023437	78.042	77.6224
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	98.9619	98.2699	bos_taurus	ENSBTAP00000068397	84.9926	84.3982
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	96.5398	96.0208	sus_scrofa_jinhua	ENSSSCP00060030942	77.933	77.514
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	96.5398	96.0208	sus_scrofa_bamei	ENSSSCP00050003748	77.933	77.514
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	99.1349	98.0969	ovis_aries_rambouillet	ENSOARP00020015487	85.1412	84.2496
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	96.5398	96.0208	sus_scrofa_largewhite	ENSSSCP00025042133	77.933	77.514
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	96.5398	96.0208	sus_scrofa_hampshire	ENSSSCP00035027961	78.042	77.6224
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	99.827	99.827	sus_scrofa_usmarc	ENSSSCP00070036472	85.8631	85.8631
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	100	100	sus_scrofa_wuzhishan	ENSSSCP00005041810	88.9231	88.9231
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	96.5398	96.0208	sus_scrofa_rongchang	ENSSSCP00030048694	77.933	77.514
ENSSSCG00015037133	sus_scrofa_tibetan	ENSSSCP00015019878	96.5398	96.0208	sus_scrofa_landrace	ENSSSCP00045040345	78.042	77.6224

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression