RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015032290	Gene ID		Accession	-
Symbol	XPO1	Alias	-	Full Name	NA
Status	Confidence	Length	47185 bases	Strand	Plus strand
Position	AORO02031942.1 : 1398573 - 1445757	RNA binding domain	IBN_N , CRM1_C , Xpo1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015018730	IBN_N	PF03810	3.9e-12	1
ENSSSCP00015018730	CRM1_C	PF08767	1.2e-134	2
ENSSSCP00015018730	Xpo1	PF08389	1.5e-41	3
ENSSSCP00015018818	IBN_N	PF03810	4e-12	1
ENSSSCP00015018818	CRM1_C	PF08767	1.2e-134	2
ENSSSCP00015018818	Xpo1	PF08389	1.5e-41	3
ENSSSCP00015019307	CRM1_C	PF08767	9.6e-135	1
ENSSSCP00015019307	Xpo1	PF08389	2.2e-38	2
ENSSSCP00015019022	CRM1_C	PF08767	1.1e-134	1
ENSSSCP00015019022	Xpo1	PF08389	1.4e-41	2
ENSSSCP00015019247	CRM1_C	PF08767	1.1e-134	1
ENSSSCP00015019247	Xpo1	PF08389	1.4e-41	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
XPO1-201	ENSSSCT00015047346	4827	1062aa	ENSSSCP00015018730
XPO1-202	ENSSSCT00015047519	4585	1071aa	ENSSSCP00015018818
XPO1-203	ENSSSCT00015047673	4446	101aa	ENSSSCP00015018893
XPO1-204	ENSSSCT00015047993	3972	1005aa	ENSSSCP00015019022
XPO1-205	ENSSSCT00015048396	3684	1005aa	ENSSSCP00015019247
XPO1-206	ENSSSCT00015048520	3513	948aa	ENSSSCP00015019307

Gene Model

Click here to download ENSSSCG00015032290's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015032290's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015009631	36.2126	18.6877	sus_scrofa_tibetan	ENSSSCP00015018818	40.7096	21.0084

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.9066	99.9066	equus_caballus	ENSECAP00000045147	95.6211	95.6211
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	100	100	sus_scrofa	ENSSSCP00000034800	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.1597	99.1597	sus_scrofa_meishan	ENSSSCP00040014257	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.1597	99.1597	sus_scrofa_berkshire	ENSSSCP00065006947	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.1597	99.1597	sus_scrofa_pietrain	ENSSSCP00055047850	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.9066	99.9066	bos_taurus	ENSBTAP00000017629	99.9066	99.9066
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.1597	99.1597	sus_scrofa_jinhua	ENSSSCP00060023816	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.1597	99.1597	sus_scrofa_bamei	ENSSSCP00050017638	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.9066	99.9066	ovis_aries_rambouillet	ENSOARP00020002000	99.9066	99.9066
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.1597	99.1597	sus_scrofa_largewhite	ENSSSCP00025020952	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.1597	99.1597	sus_scrofa_hampshire	ENSSSCP00035033440	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	100	100	sus_scrofa_usmarc	ENSSSCP00070051828	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	100	100	sus_scrofa_wuzhishan	ENSSSCP00005039497	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.1597	99.1597	sus_scrofa_rongchang	ENSSSCP00030027958	100	100
ENSSSCG00015032290	sus_scrofa_tibetan	ENSSSCP00015018818	99.1597	99.1597	sus_scrofa_landrace	ENSSSCP00045039464	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression