RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015020942	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1151 bases	Strand	Minus strand
Position	AORO02019941.1 : 726668 - 727818	RNA binding domain	Ribosomal_L19e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015010850	Ribosomal_L19e	PF01280	6.6e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00015027695	468	155aa	ENSSSCP00015010850

Gene Model

Click here to download ENSSSCG00015020942's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015020942's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015030530	68.8775	64.7959	sus_scrofa_tibetan	ENSSSCP00015010850	87.0968	81.9355
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015039047	68.5567	64.433	sus_scrofa_tibetan	ENSSSCP00015010850	85.8064	80.6452
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015039866	53.6458	45.3125	sus_scrofa_tibetan	ENSSSCP00015010850	66.4516	56.129

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	85.8064	80.6452	equus_caballus	ENSECAP00000082924	49.4424	46.4684
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	99.3548	98.7097	sus_scrofa	ENSSSCP00000081227	99.3548	98.7097
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	100	100	sus_scrofa_meishan	ENSSSCP00040011299	100	100
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	99.3548	98.7097	sus_scrofa_berkshire	ENSSSCP00065014569	99.3548	98.7097
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	99.3548	98.7097	sus_scrofa_pietrain	ENSSSCP00055039684	99.3548	98.7097
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	98.7097	98.7097	sus_scrofa_jinhua	ENSSSCP00060041634	98.7097	98.7097
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	98.0645	98.0645	sus_scrofa_bamei	ENSSSCP00050008667	98.0645	98.0645
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	92.2581	90.3226	sus_scrofa_usmarc	ENSSSCP00070018897	85.119	83.3333
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	98.7097	97.4194	sus_scrofa_wuzhishan	ENSSSCP00005018480	98.7097	97.4194
ENSSSCG00015020942	sus_scrofa_tibetan	ENSSSCP00015010850	98.7097	97.4194	sus_scrofa_rongchang	ENSSSCP00030001309	98.7097	97.4194

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression