RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015018776	Gene ID		Accession	-
Symbol	GFM2	Alias	-	Full Name	NA
Status	Confidence	Length	150579 bases	Strand	Minus strand
Position	AORO02027892.1 : 1413037 - 1563615	RNA binding domain	GTP_EFTU , EFG_IV , MMR_HSR1 , GTP_EFTU_D2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015009661	GTP_EFTU	PF00009	6.1e-67	1
ENSSSCP00015009661	EFG_IV	PF03764	4e-12	2
ENSSSCP00015009661	MMR_HSR1	PF01926	0.00016	3
ENSSSCP00015009661	GTP_EFTU_D2	PF03144	2.4e-07	4
ENSSSCP00015009869	GTP_EFTU	PF00009	3.4e-59	1
ENSSSCP00015009869	MMR_HSR1	PF01926	0.00014	2
ENSSSCP00015009814	GTP_EFTU	PF00009	2.6e-51	1
ENSSSCP00015009814	EFG_IV	PF03764	3.5e-12	2
ENSSSCP00015009814	GTP_EFTU_D2	PF03144	2.3e-07	3
ENSSSCP00015009716	GTP_EFTU	PF00009	5.5e-48	1
ENSSSCP00015009716	EFG_IV	PF03764	3.8e-12	2
ENSSSCP00015009716	GTP_EFTU_D2	PF03144	2.4e-07	3
ENSSSCP00015009770	GTP_EFTU	PF00009	4.3e-42	1
ENSSSCP00015009770	GTP_EFTU	PF00009	4.3e-42	2
ENSSSCP00015009770	EFG_IV	PF03764	3.7e-12	3
ENSSSCP00015009770	GTP_EFTU_D2	PF03144	2.3e-07	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
GFM2-201	ENSSSCT00015024828	8114	776aa	ENSSSCP00015009661
GFM2-202	ENSSSCT00015024971	8033	749aa	ENSSSCP00015009716
GFM2-203	ENSSSCT00015025089	4236	734aa	ENSSSCP00015009770
GFM2-204	ENSSSCT00015025195	3845	724aa	ENSSSCP00015009814
GFM2-205	ENSSSCT00015025299	3811	782aa	ENSSSCP00015009869
GFM2-206	ENSSSCT00015025477	5783	668aa	ENSSSCP00015009948
GFM2-207	ENSSSCT00015025583	5746	703aa	ENSSSCP00015009990

Gene Model

Click here to download ENSSSCG00015018776's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015018776's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015018732	55.4455	33.1683	sus_scrofa_tibetan	ENSSSCP00015009869	14.3223	8.56777

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	69.3095	61.8926	equus_caballus	ENSECAP00000021606	78.437	70.0434
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	72.2506	66.8798	sus_scrofa	ENSSSCP00000078001	80.4843	74.5014
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	72.3785	67.0077	sus_scrofa_meishan	ENSSSCP00040043839	80.5121	74.5377
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	72.3785	67.0077	sus_scrofa_berkshire	ENSSSCP00065021637	80.5121	74.5377
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	72.3785	67.0077	sus_scrofa_pietrain	ENSSSCP00055001234	80.5121	74.5377
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	68.9258	62.1483	bos_taurus	ENSBTAP00000021301	80.4478	72.5373
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	72.3785	67.0077	sus_scrofa_jinhua	ENSSSCP00060009154	80.5121	74.5377
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	99.6164	99.4885	sus_scrofa_bamei	ENSSSCP00050019676	86.4595	86.3485
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	69.1816	61.8926	ovis_aries_rambouillet	ENSOARP00020026630	80.7463	72.2388
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	99.7442	99.4885	sus_scrofa_hampshire	ENSSSCP00035019637	86.5705	86.3485
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	72.2506	66.8798	sus_scrofa_wuzhishan	ENSSSCP00005009887	80.4843	74.5014
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	72.2506	66.7519	sus_scrofa_rongchang	ENSSSCP00030042854	80.3698	74.2532
ENSSSCG00015018776	sus_scrofa_tibetan	ENSSSCP00015009869	72.3785	67.0077	sus_scrofa_landrace	ENSSSCP00045002388	80.5121	74.5377

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression