RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015018239	Gene ID		Accession	-
Symbol	MTREX	Alias	-	Full Name	NA
Status	Confidence	Length	218792 bases	Strand	Minus strand
Position	AORO02030652.1 : 312764 - 531555	RNA binding domain	DEAD , rRNA_proc-arch
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015009550	DEAD	PF00270	6.7e-17	1
ENSSSCP00015009550	rRNA_proc-arch	PF13234	2.2e-87	2
ENSSSCP00015009654	DEAD	PF00270	6.9e-17	1
ENSSSCP00015009654	rRNA_proc-arch	PF13234	2.3e-87	2
ENSSSCP00015009739	DEAD	PF00270	7.2e-17	1
ENSSSCP00015009739	rRNA_proc-arch	PF13234	2.4e-87	2
ENSSSCP00015009421	DEAD	PF00270	7.2e-17	1
ENSSSCP00015009421	rRNA_proc-arch	PF13234	2.4e-87	2
ENSSSCP00015009501	DEAD	PF00270	7.3e-17	1
ENSSSCP00015009501	rRNA_proc-arch	PF13234	2.4e-87	2
ENSSSCP00015009598	DEAD	PF00270	7.3e-17	1
ENSSSCP00015009598	rRNA_proc-arch	PF13234	2.5e-87	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
MTREX-201	ENSSSCT00015024194	5272	1042aa	ENSSSCP00015009421
MTREX-202	ENSSSCT00015024382	6313	1031aa	ENSSSCP00015009501
MTREX-204	ENSSSCT00015024545	3236	996aa	ENSSSCP00015009550
MTREX-203	ENSSSCT00015024665	3402	1047aa	ENSSSCP00015009598
MTREX-205	ENSSSCT00015024815	3899	1014aa	ENSSSCP00015009654
MTREX-206	ENSSSCT00015025020	3207	961aa	ENSSSCP00015009739

Gene Model

Click here to download ENSSSCG00015018239's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015018239's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015004312	14.4803	6.08261	sus_scrofa_tibetan	ENSSSCP00015009598	30.468	12.7985
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015033668	15.0749	7.6779	sus_scrofa_tibetan	ENSSSCP00015009598	30.7545	15.6638
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015019072	18.7793	9.85915	sus_scrofa_tibetan	ENSSSCP00015009598	30.5635	16.0458
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015007755	26.9517	13.1041	sus_scrofa_tibetan	ENSSSCP00015009598	27.6982	13.467
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015027640	24.1475	12.1086	sus_scrofa_tibetan	ENSSSCP00015009598	33.1423	16.6189
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015041992	45.7532	31.0096	sus_scrofa_tibetan	ENSSSCP00015009598	54.5368	36.9627
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015015580	12.3794	5.70709	sus_scrofa_tibetan	ENSSSCP00015009598	28.1757	12.9895

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	96.3706	94.7469	equus_caballus	ENSECAP00000057963	96.0038	94.3863
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	96.6571	95.7975	sus_scrofa	ENSSSCP00000017920	97.1209	96.2572
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	96.6571	95.7975	sus_scrofa_meishan	ENSSSCP00040020864	97.1209	96.2572
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	100	100	sus_scrofa_berkshire	ENSSSCP00065015341	100	100
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	100	100	sus_scrofa_pietrain	ENSSSCP00055025380	100	100
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	96.2751	95.0334	bos_taurus	ENSBTAP00000044575	96.9231	95.6731
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	100	100	sus_scrofa_jinhua	ENSSSCP00060024471	100	100
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	100	100	sus_scrofa_bamei	ENSSSCP00050036017	100	100
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	96.1796	95.0334	ovis_aries_rambouillet	ENSOARP00020015392	96.6411	95.4894
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	100	100	sus_scrofa_largewhite	ENSSSCP00025033012	100	100
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	96.7526	95.893	sus_scrofa_hampshire	ENSSSCP00035043482	97.2169	96.3532
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	100	100	sus_scrofa_usmarc	ENSSSCP00070003307	100	100
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	96.5616	95.702	sus_scrofa_wuzhishan	ENSSSCP00005012251	97.1182	96.2536
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	100	100	sus_scrofa_rongchang	ENSSSCP00030045441	100	100
ENSSSCG00015018239	sus_scrofa_tibetan	ENSSSCP00015009598	96.6571	95.7975	sus_scrofa_landrace	ENSSSCP00045007733	97.1209	96.2572

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression