RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015016198	Gene ID	100518433	Accession	-
Symbol	TTC39A	Alias	-	Full Name	tetratricopeptide repeat domain 39A
Status	Confidence	Length	48682 bases	Strand	Plus strand
Position	AORO02009691.1 : 762895 - 811576	RNA binding domain	Iml2-TPR_39
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015008516	Iml2-TPR_39	PF10300	1.2e-171	1
ENSSSCP00015008458	Iml2-TPR_39	PF10300	1.2e-171	1
ENSSSCP00015008506	Iml2-TPR_39	PF10300	1.4e-163	1
ENSSSCP00015008492	Iml2-TPR_39	PF10300	1.3e-33	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TTC39A-201	ENSSSCT00015021511	2762	581aa	ENSSSCP00015008458
TTC39A-202	ENSSSCT00015021621	3115	221aa	ENSSSCP00015008492
TTC39A-203	ENSSSCT00015021662	2616	546aa	ENSSSCP00015008506
TTC39A-204	ENSSSCT00015021700	2666	578aa	ENSSSCP00015008516

Gene Model

Click here to download ENSSSCG00015016198's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015016198's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015024438	59.1727	40.1079	sus_scrofa_tibetan	ENSSSCP00015008458	56.6265	38.3821
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015018095	44.7706	23.6697	sus_scrofa_tibetan	ENSSSCP00015008458	41.9966	22.2031

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	98.2788	96.5577	equus_caballus	ENSECAP00000074484	87.7112	86.1751
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	100	100	sus_scrofa	ENSSSCP00000040824	100	100
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	97.2461	97.2461	sus_scrofa_meishan	ENSSSCP00040018349	93.2343	93.2343
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	100	100	sus_scrofa_berkshire	ENSSSCP00065034071	100	100
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	100	100	sus_scrofa_pietrain	ENSSSCP00055045474	100	100
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	97.9346	95.525	bos_taurus	ENSBTAP00000074271	90.1743	87.9556
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	97.2461	97.2461	sus_scrofa_jinhua	ENSSSCP00060019911	93.2343	93.2343
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	100	100	sus_scrofa_bamei	ENSSSCP00050042416	100	100
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	98.4509	96.2134	ovis_aries_rambouillet	ENSOARP00020005398	98.4509	96.2134
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	100	100	sus_scrofa_largewhite	ENSSSCP00025003017	100	100
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	100	100	sus_scrofa_hampshire	ENSSSCP00035043890	100	100
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	97.5904	96.5577	sus_scrofa_usmarc	ENSSSCP00070051502	73.6364	72.8571
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	94.6644	94.6644	sus_scrofa_wuzhishan	ENSSSCP00005019589	94.8276	94.8276
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	97.2461	97.2461	sus_scrofa_rongchang	ENSSSCP00030008312	93.2343	93.2343
ENSSSCG00015016198	sus_scrofa_tibetan	ENSSSCP00015008458	91.5663	91.3941	sus_scrofa_landrace	ENSSSCP00045008363	99.4393	99.2523

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression