RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015012187	Gene ID	100624339	Accession	-
Symbol	IPO13	Alias	-	Full Name	importin 13
Status	Confidence	Length	21661 bases	Strand	Minus strand
Position	AORO02010172.1 : 215225 - 236885	RNA binding domain	IBN_N , Xpo1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015006386	IBN_N	PF03810	4.8e-09	1
ENSSSCP00015006386	Xpo1	PF08389	4.2e-28	2
ENSSSCP00015006466	IBN_N	PF03810	5.6e-09	1
ENSSSCP00015006466	Xpo1	PF08389	4.2e-28	2
ENSSSCP00015006300	IBN_N	PF03810	6.4e-09	1
ENSSSCP00015006300	Xpo1	PF08389	1e-27	2
ENSSSCP00015006414	IBN_N	PF03810	7.1e-09	1
ENSSSCP00015006414	Xpo1	PF08389	1.1e-27	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
IPO13-201	ENSSSCT00015016095	623	181aa	ENSSSCP00015006265
IPO13-202	ENSSSCT00015016174	3632	963aa	ENSSSCP00015006300
IPO13-205	ENSSSCT00015016393	5305	784aa	ENSSSCP00015006386
IPO13-204	ENSSSCT00015016481	3754	901aa	ENSSSCP00015006414
IPO13-203	ENSSSCT00015016608	4614	787aa	ENSSSCP00015006466

Gene Model

Click here to download ENSSSCG00015012187's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015012187's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015005137	42.9467	22.3615	sus_scrofa_tibetan	ENSSSCP00015006300	42.6791	22.2222

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	98.6501	97.7155	equus_caballus	ENSECAP00000045049	99.5807	98.6373
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	81.6199	81.5161	sus_scrofa	ENSSSCP00000028113	99.1173	98.9912
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	96.8847	96.8847	sus_scrofa_meishan	ENSSSCP00040044946	100	100
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	96.8847	96.8847	sus_scrofa_berkshire	ENSSSCP00065027001	100	100
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	98.1308	97.5078	sus_scrofa_pietrain	ENSSSCP00055006862	97.7249	97.1044
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	99.5846	99.1693	bos_taurus	ENSBTAP00000025142	99.5846	99.1693
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	79.4393	78.8162	sus_scrofa_jinhua	ENSSSCP00060039812	84.344	83.6825
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	96.677	96.677	sus_scrofa_bamei	ENSSSCP00050030912	99.7856	99.7856
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	99.6885	99.0654	ovis_aries_rambouillet	ENSOARP00020003338	99.6885	99.0654
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	96.8847	96.8847	sus_scrofa_largewhite	ENSSSCP00025043459	100	100
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	96.8847	96.8847	sus_scrofa_hampshire	ENSSSCP00035009931	100	100
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	94.9117	94.9117	sus_scrofa_usmarc	ENSSSCP00070050571	100	100
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	95.1194	95.1194	sus_scrofa_wuzhishan	ENSSSCP00005007070	95.1194	95.1194
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	79.5431	78.92	sus_scrofa_rongchang	ENSSSCP00030018408	84.3612	83.7004
ENSSSCG00015012187	sus_scrofa_tibetan	ENSSSCP00015006300	100	100	sus_scrofa_landrace	ENSSSCP00045039153	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression