RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	ENSSSCG00015010945	Gene ID		Accession	-
Symbol	XPOT	Alias	-	Full Name	NA
Status	Confidence	Length	219806 bases	Strand	Plus strand
Position	AORO02011438.1 : 91192 - 310997	RNA binding domain	IBN_N , Xpo1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015005676	IBN_N	PF03810	1.7e-05	1
ENSSSCP00015005676	Xpo1	PF08389	2.5e-42	2
ENSSSCP00015005837	IBN_N	PF03810	2.9e-05	1
ENSSSCP00015005837	Xpo1	PF08389	1.1e-41	2
ENSSSCP00015005716	IBN_N	PF03810	2.9e-05	1
ENSSSCP00015005716	Xpo1	PF08389	2.7e-42	2
ENSSSCP00015005746	IBN_N	PF03810	3e-05	1
ENSSSCP00015005746	Xpo1	PF08389	5.7e-42	2
ENSSSCP00015005624	IBN_N	PF03810	3.2e-05	1
ENSSSCP00015005624	Xpo1	PF08389	5.4e-42	2
ENSSSCP00015005931	IBN_N	PF03810	3.3e-05	1
ENSSSCP00015005931	Xpo1	PF08389	1.3e-41	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
XPOT-201	ENSSSCT00015014495	4286	932aa	ENSSSCP00015005624
XPOT-202	ENSSSCT00015014624	5794	644aa	ENSSSCP00015005676
XPOT-203	ENSSSCT00015014717	3821	905aa	ENSSSCP00015005716
XPOT-204	ENSSSCT00015014796	3852	943aa	ENSSSCP00015005746
XPOT-205	ENSSSCT00015015071	6688	962aa	ENSSSCP00015005837
XPOT-206	ENSSSCT00015015340	6354	1016aa	ENSSSCP00015005931

Gene Model

Click here to download ENSSSCG00015010945's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015010945's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015010945

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	93.3071	92.2244	equus_caballus	ENSECAP00000016204	98.0352	96.8976
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	100	100	sus_scrofa	ENSSSCP00000071218	100	100
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	86.811	86.4173	sus_scrofa_meishan	ENSSSCP00040041708	98.9899	98.541
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	100	100	sus_scrofa_berkshire	ENSSSCP00065040752	100	100
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	86.811	86.4173	sus_scrofa_pietrain	ENSSSCP00055019090	98.9899	98.541
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	94.4882	93.7992	bos_taurus	ENSBTAP00000069261	97.3631	96.6531
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	100	99.9016	sus_scrofa_jinhua	ENSSSCP00060034932	100	99.9016
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	100	100	sus_scrofa_bamei	ENSSSCP00050002966	100	100
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	97.7362	97.0472	ovis_aries_rambouillet	ENSOARP00020011226	98.2196	97.5272
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	87.4016	86.6142	sus_scrofa_largewhite	ENSSSCP00025036729	96.5217	95.6522
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	100	100	sus_scrofa_hampshire	ENSSSCP00035042300	100	100
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	97.1457	97.1457	sus_scrofa_usmarc	ENSSSCP00070048766	99.5964	99.5964
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	100	100	sus_scrofa_wuzhishan	ENSSSCP00005012793	100	100
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	100	100	sus_scrofa_rongchang	ENSSSCP00030006707	100	100
ENSSSCG00015010945	sus_scrofa_tibetan	ENSSSCP00015005931	100	100	sus_scrofa_landrace	ENSSSCP00045046325	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression