RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00015009927	Gene ID		Accession	-
Symbol	TNPO3	Alias	-	Full Name	NA
Status	Confidence	Length	101108 bases	Strand	Plus strand
Position	AORO02015053.1 : 37166 - 138273	RNA binding domain	Xpo1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00015005232	Xpo1	PF08389	4.5e-28	1
ENSSSCP00015005137	Xpo1	PF08389	4.7e-28	1
ENSSSCP00015005169	Xpo1	PF08389	5.2e-28	1
ENSSSCP00015005342	Xpo1	PF08389	8.1e-27	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TNPO3-201	ENSSSCT00015013295	4394	957aa	ENSSSCP00015005137
TNPO3-202	ENSSSCT00015013372	4100	859aa	ENSSSCP00015005169
TNPO3-204	ENSSSCT00015013497	5990	857aa	ENSSSCP00015005232
TNPO3-203	ENSSSCT00015013763	3977	451aa	ENSSSCP00015005342

Gene Model

Click here to download ENSSSCG00015009927's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00015009927's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015006300	42.6791	22.2222	sus_scrofa_tibetan	ENSSSCP00015005137	42.9467	22.3615

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	96.3427	96.1338	equus_caballus	ENSECAP00000062204	97.3601	97.1489
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa	ENSSSCP00000058996	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa_meishan	ENSSSCP00040036270	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa_berkshire	ENSSSCP00065032821	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa_pietrain	ENSSSCP00055032147	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	95.9248	95.5068	bos_taurus	ENSBTAP00000006573	99.4583	99.0249
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa_jinhua	ENSSSCP00060035652	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa_bamei	ENSSSCP00050024915	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	95.8203	95.2978	ovis_aries_rambouillet	ENSOARP00020008247	99.3499	98.8082
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa_largewhite	ENSSSCP00025000641	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa_hampshire	ENSSSCP00035044273	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	96.4472	96.4472	sus_scrofa_usmarc	ENSSSCP00070047363	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	96.4472	96.4472	sus_scrofa_wuzhishan	ENSSSCP00005008342	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa_rongchang	ENSSSCP00030044277	100	100
ENSSSCG00015009927	sus_scrofa_tibetan	ENSSSCP00015005137	100	100	sus_scrofa_landrace	ENSSSCP00045012923	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression