RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSSSCG00005045271	Gene ID	110256443	Accession	-
Symbol	QARS	Alias	-	Full Name	glutaminyl-tRNA synthetase 1
Status	Confidence	Length	7699 bases	Strand	Plus strand
Position	KQ004348.1 : 1489166 - 1496864	RNA binding domain	tRNA_synt_1c_R2 , tRNA_synt_1c_R1 , tRNA-synt_1c , tRNA-synt_1c_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005045812	tRNA_synt_1c_R2	PF04557	5.5e-26	1
ENSSSCP00005045812	tRNA_synt_1c_R1	PF04558	1.9e-28	2
ENSSSCP00005045812	tRNA_synt_1c_R1	PF04558	1.9e-28	3
ENSSSCP00005045812	tRNA-synt_1c	PF00749	1.6e-115	4
ENSSSCP00005045812	tRNA-synt_1c_C	PF03950	2.2e-44	5
ENSSSCP00005045798	tRNA_synt_1c_R2	PF04557	5.8e-26	1
ENSSSCP00005045798	tRNA_synt_1c_R1	PF04558	1.4e-48	2
ENSSSCP00005045798	tRNA-synt_1c	PF00749	1.7e-115	3
ENSSSCP00005045798	tRNA-synt_1c_C	PF03950	2.3e-44	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
QARS-201	ENSSSCT00005073121	2447	775aa	ENSSSCP00005045798
QARS-202	ENSSSCT00005073137	2232	743aa	ENSSSCP00005045812

Gene Model

Click here to download ENSSSCG00005045271's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005045271's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005004146	58.7108	41.4634	sus_scrofa_wuzhishan	ENSSSCP00005045798	43.4839	30.7097
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005014731	59.5113	44.3281	sus_scrofa_wuzhishan	ENSSSCP00005045798	44	32.7742
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005018567	21.015	13.3377	sus_scrofa_wuzhishan	ENSSSCP00005045798	41.6774	26.4516
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005008464	31.8359	17.7734	sus_scrofa_wuzhishan	ENSSSCP00005045798	21.0323	11.7419

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	100	100	sus_scrofa_berkshire	ENSSSCP00065048854	100	100
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	100	100	sus_scrofa	ENSSSCP00000032503	100	100
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	100	100	sus_scrofa_bamei	ENSSSCP00050010562	100	100
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	90.3226	89.9355	sus_scrofa_rongchang	ENSSSCP00030032020	98.3146	97.8933
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	90.3226	89.9355	sus_scrofa_landrace	ENSSSCP00045036411	98.3146	97.8933
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	93.4194	91.2258	equus_caballus	ENSECAP00000002874	97.0509	94.7721
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	90.3226	89.9355	sus_scrofa_meishan	ENSSSCP00040034226	98.3146	97.8933
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	97.2903	95.7419	bos_taurus	ENSBTAP00000025191	97.2903	95.7419
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	90.3226	89.9355	sus_scrofa_hampshire	ENSSSCP00035043464	98.3146	97.8933
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	90.3226	89.9355	sus_scrofa_jinhua	ENSSSCP00060031413	98.3146	97.8933
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	90.3226	89.9355	sus_scrofa_largewhite	ENSSSCP00025029353	98.3146	97.8933
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	100	100	sus_scrofa_pietrain	ENSSSCP00055022340	100	100
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	100	100	sus_scrofa_usmarc	ENSSSCP00070007599	100	100
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	98.1936	97.9355	sus_scrofa_tibetan	ENSSSCP00015039343	98.9597	98.6996
ENSSSCG00005045271	sus_scrofa_wuzhishan	ENSSSCP00005045798	97.2903	95.871	ovis_aries_rambouillet	ENSOARP00020028569	97.2903	95.871

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression