RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSSSCG00005044979	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	9137 bases	Strand	Minus strand
Position	KQ004261.1 : 2184 - 11320	RNA binding domain	NTF2 , Tap-RNA_bind , TAP_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSSSCP00005045403	NTF2	PF02136	9.1e-09	1
ENSSSCP00005045403	Tap-RNA_bind	PF09162	3.9e-39	2
ENSSSCP00005045403	TAP_C	PF03943	0.00013	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSSSCT00005072594	1563	520aa	ENSSSCP00005045403

Gene Model

Click here to download ENSSSCG00005044979's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSSSCG00005044979's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005013884	67.1348	57.5843	sus_scrofa_wuzhishan	ENSSSCP00005045403	45.9615	39.4231
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005035731	50.565	38.4181	sus_scrofa_wuzhishan	ENSSSCP00005045403	68.8462	52.3077

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	88.6538	84.4231	sus_scrofa_berkshire	ENSSSCP00065034059	73.2909	69.7933
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	88.8462	85.3846	sus_scrofa	ENSSSCP00000013304	75.2443	72.3127
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	89.4231	85.5769	sus_scrofa_bamei	ENSSSCP00050019546	73.9269	70.7472
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	89.2308	85	sus_scrofa_rongchang	ENSSSCP00030020106	73.7679	70.2703
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	88.6538	84.4231	sus_scrofa_landrace	ENSSSCP00045012748	73.2909	69.7933
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	40.5769	35.1923	equus_caballus	ENSECAP00000059132	59.2697	51.4045
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	89.2308	85.3846	sus_scrofa_meishan	ENSSSCP00040027631	73.7679	70.5882
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	40.1923	32.5	bos_taurus	ENSBTAP00000006996	58.5434	47.3389
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	88.4615	84.4231	sus_scrofa_hampshire	ENSSSCP00035031458	73.132	69.7933
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	89.4231	85.1923	sus_scrofa_jinhua	ENSSSCP00060037874	73.9269	70.4293
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	88.6538	84.4231	sus_scrofa_largewhite	ENSSSCP00025026554	73.2909	69.7933
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	54.0385	46.7308	sus_scrofa_pietrain	ENSSSCP00055016955	68.3698	59.1241
ENSSSCG00005044979	sus_scrofa_wuzhishan	ENSSSCP00005045403	88.8462	85	sus_scrofa_usmarc	ENSSSCP00070049163	73.4499	70.2703

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression